22 __all__ = (
"FitsRawFormatterBase",)
24 from abc
import ABCMeta, abstractmethod
26 from astro_metadata_translator
import ObservationInfo
31 from lsst.daf.butler
import FileDescriptor
32 from lsst.daf.butler.formatters.fitsExposureFormatter
import FitsExposureFormatter
35 from .makeRawVisitInfoViaObsInfo
import MakeRawVisitInfoViaObsInfo
36 from .utils
import createInitialSkyWcs, InitialSkyWcsError
40 """Abstract base class for reading and writing raw data to and from 50 def fromMetadata(cls, metadata, obsInfo=None, storageClass=None, location=None):
51 """Construct a possibly-limited formatter from known metadata. 55 metadata : `lsst.daf.base.PropertyList` 56 Raw header metadata, with any fixes (see 57 `astro_metadata_translator.fix_header`) applied but nothing 59 obsInfo : `astro_metadata_translator.ObservationInfo`, optional 60 Structured information already extracted from ``metadata``. 61 If not provided, will be read from ``metadata`` on first use. 62 storageClass : `lsst.daf.butler.StorageClass`, optional 63 StorageClass for this file. If not provided, the formatter will 64 only support `makeWcs`, `makeVisitInfo`, `makeFilter`, and other 65 operations that operate purely on metadata and not the actual file. 66 location : `lsst.daf.butler.Location`, optional. 67 Location of the file. If not provided, the formatter will only 68 support `makeWcs`, `makeVisitInfo`, `makeFilter`, and other 69 operations that operate purely on metadata and not the actual file. 73 formatter : `FitsRawFormatterBase` 74 An instance of ``cls``. 76 self = cls(FileDescriptor(location, storageClass))
84 """`~astro_metadata_translator.MetadataTranslator` to translate 85 metadata header to `~astro_metadata_translator.ObservationInfo`. 89 _observationInfo =
None 94 """`~lsst.obs.base.FilterDefinitions`, defining the filters for this 100 """Read just the image component of the Exposure. 104 image : `~lsst.afw.image.Image` 105 In-memory image component. 107 return lsst.afw.image.ImageU(self.fileDescriptor.location.path)
110 """Read just the mask component of the Exposure. 112 May return None (as the default implementation does) to indicate that 113 there is no mask information to be extracted (at least not trivially) 114 from the raw data. This will prohibit direct reading of just the mask, 115 and set the mask of the full Exposure to zeros. 119 mask : `~lsst.afw.image.Mask` 120 In-memory mask component. 125 """Read just the variance component of the Exposure. 127 May return None (as the default implementation does) to indicate that 128 there is no variance information to be extracted (at least not 129 trivially) from the raw data. This will prohibit direct reading of 130 just the variance, and set the variance of the full Exposure to zeros. 134 image : `~lsst.afw.image.Image` 135 In-memory variance component. 140 """Boolean to determine if the exposure is thought to be on the sky. 145 Returns `True` if the observation looks like it was taken on the 146 sky. Returns `False` if this observation looks like a calibration 151 If there is tracking RA/Dec information associated with the 152 observation it is assumed that the observation is on sky. 153 Currently the observation type is not checked. 160 """Remove metadata entries that are parsed into components. 169 """Construct a VisitInfo from metadata. 173 visitInfo : `~lsst.afw.image.VisitInfo` 174 Structured metadata about the observation. 176 return MakeRawVisitInfoViaObsInfo.observationInfo2visitInfo(self.
observationInfo)
180 """Return the detector that acquired this raw exposure. 185 The identifying number of the detector to get. 189 detector : `~lsst.afw.cameraGeom.Detector` 190 The detector associated with that ``id``. 192 raise NotImplementedError(
"Must be implemented by subclasses.")
195 """Create a SkyWcs from information about the exposure. 197 If VisitInfo is not None, use it and the detector to create a SkyWcs, 198 otherwise return the metadata-based SkyWcs (always created, so that 199 the relevant metadata keywords are stripped). 203 visitInfo : `~lsst.afw.image.VisitInfo` 204 The information about the telescope boresight and camera 205 orientation angle for this exposure. 206 detector : `~lsst.afw.cameraGeom.Detector` 207 The detector used to acquire this exposure. 211 skyWcs : `~lsst.afw.geom.SkyWcs` 212 Reversible mapping from pixel coordinates to sky coordinates. 217 Raised if there is an error generating the SkyWcs, chained from the 218 lower-level exception if available. 226 log = lsst.log.Log.getLogger(
"fitsRawFormatter")
227 if visitInfo
is None:
228 msg =
"No VisitInfo; cannot access boresight information. Defaulting to metadata-based SkyWcs." 232 "See warnings in log messages for details.")
238 def _createSkyWcsFromMetadata(self):
239 """Create a SkyWcs from the FITS header metadata in an Exposure. 243 skyWcs: `lsst.afw.geom.SkyWcs`, or None 244 The WCS that was created from ``self.metadata``, or None if that 245 creation fails due to invalid metadata. 252 return lsst.afw.geom.makeSkyWcs(self.metadata, strip=
True)
253 except TypeError
as e:
254 log = lsst.log.Log.getLogger(
"fitsRawFormatter")
255 log.warn(
"Cannot create a valid WCS from metadata: %s", e.args[0])
259 """Construct a Filter from metadata. 263 filter : `~lsst.afw.image.Filter` 264 Object that identifies the filter for this image. 269 Raised if the physical filter was not registered via 270 `~lsst.afw.image.utils.defineFilter`. 275 """Read a component held by the Exposure. 279 component : `str`, optional 280 Component to read from the file. 281 parameters : `dict`, optional 282 If specified, a dictionary of slicing parameters that 283 overrides those in ``fileDescriptor``. 287 obj : component-dependent 288 In-memory component object. 293 Raised if the requested component cannot be handled. 295 if component ==
"image":
297 elif component ==
"mask":
299 elif component ==
"variance":
301 elif component ==
"filter":
303 elif component ==
"visitInfo":
305 elif component ==
"wcs":
308 return self.
makeWcs(visitInfo, detector)
312 """Read the full Exposure object. 316 parameters : `dict`, optional 317 If specified, a dictionary of slicing parameters that overrides 318 those in the `fileDescriptor` attribute. 322 exposure : `~lsst.afw.image.Exposure` 323 Complete in-memory exposure. 325 from lsst.afw.image
import makeExposure, makeMaskedImage
326 full = makeExposure(makeMaskedImage(self.
readImage()))
331 if variance
is not None:
332 full.setVariance(variance)
334 info = full.getInfo()
337 info.setWcs(self.
makeWcs(info.getVisitInfo(), info.getDetector()))
340 full.setMetadata(self.metadata)
344 """Read the SkyWcs stored in the un-modified raw FITS WCS header keys. 346 return lsst.afw.geom.makeSkyWcs(lsst.afw.fits.readMetadata(self.fileDescriptor))
349 """Write a Python object to a file. 353 inMemoryDataset : `object` 354 The Python object to store. 359 The `URI` where the primary file is stored. 361 raise NotImplementedError(
"Raw data cannot be `put`.")
365 """The `~astro_metadata_translator.ObservationInfo` extracted from 366 this file's metadata (`~astro_metadata_translator.ObservationInfo`,
def createInitialSkyWcs(visitInfo, detector, flipX=False)