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# This file is part of pipe_tasks. 

# 

# Developed for the LSST Data Management System. 

# This product includes software developed by the LSST Project 

# (https://www.lsst.org). 

# See the COPYRIGHT file at the top-level directory of this distribution 

# for details of code ownership. 

# 

# This program is free software: you can redistribute it and/or modify 

# it under the terms of the GNU General Public License as published by 

# the Free Software Foundation, either version 3 of the License, or 

# (at your option) any later version. 

# 

# This program is distributed in the hope that it will be useful, 

# but WITHOUT ANY WARRANTY; without even the implied warranty of 

# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 

# GNU General Public License for more details. 

# 

# You should have received a copy of the GNU General Public License 

# along with this program. If not, see <https://www.gnu.org/licenses/>. 

 

from lsst.pipe.base import (Struct, PipelineTask, PipelineTaskConfig, PipelineTaskConnections) 

import lsst.pipe.base.connectionTypes as cT 

 

from lsst.pex.config import ConfigurableField 

from lsst.meas.deblender import SourceDeblendTask, MultibandDeblendTask 

 

import lsst.afw.image as afwImage 

import lsst.afw.table as afwTable 

 

__all__ = ("DeblendCoaddSourcesSingleConfig", "DeblendCoaddSourcesSingleTask", 

"DeblendCoaddSourcesMultiConfig", "DeblendCoaddSourcesMultiTask") 

 

 

deblendBaseTemplates = {"inputCoaddName": "deep", "outputCoaddName": "deep"} 

 

 

class DeblendCoaddSourceSingleConnections(PipelineTaskConnections, 

dimensions=("tract", "patch", "abstract_filter", "skymap"), 

defaultTemplates=deblendBaseTemplates): 

inputSchema = cT.InitInput( 

doc="Input schema to use in the deblend catalog", 

name="{inputCoaddName}Coadd_mergeDet_schema", 

storageClass="SourceCatalog" 

) 

peakSchema = cT.InitInput( 

doc="Schema of the footprint peak catalogs", 

name="{inputCoaddName}Coadd_peak_schema", 

storageClass="PeakCatalog" 

) 

mergedDetections = cT.Input( 

doc="Detection catalog merged across bands", 

name="{inputCoaddName}Coadd_mergeDet", 

storageClass="SourceCatalog", 

dimensions=("tract", "patch", "skymap") 

) 

coadd = cT.Input( 

doc="Exposure on which to run deblending", 

name="{inputCoaddName}Coadd_calexp", 

storageClass="ExposureF", 

dimensions=("tract", "patch", "abstract_filter", "skymap") 

) 

measureCatalog = cT.Output( 

doc="The output measurement catalog of deblended sources", 

name="{outputCoaddName}Coadd_deblendedFlux", 

storageClass="SourceCatalog", 

dimensions=("tract", "patch", "abstract_filter", "skymap") 

) 

outputSchema = cT.InitOutput( 

doc="Output of the schema used in deblending task", 

name="{outputCoaddName}Coadd_deblendedFlux_schema", 

storageClass="SourceCatalog" 

) 

 

def setDefaults(self): 

super().setDefaults() 

self.singleBandDeblend.propagateAllPeaks = True 

 

 

class DeblendCoaddSourcesSingleConfig(PipelineTaskConfig, 

pipelineConnections=DeblendCoaddSourceSingleConnections): 

singleBandDeblend = ConfigurableField( 

target=SourceDeblendTask, 

doc="Task to deblend an image in one band" 

) 

 

 

class DeblendCoaddSourcesMultiConnections(PipelineTaskConnections, 

dimensions=("tract", "patch", "skymap"), 

defaultTemplates=deblendBaseTemplates): 

inputSchema = cT.InitInput( 

doc="Input schema to use in the deblend catalog", 

name="{inputCoaddName}Coadd_mergeDet_schema", 

storageClass="SourceCatalog" 

) 

peakSchema = cT.InitInput( 

doc="Schema of the footprint peak catalogs", 

name="{inputCoaddName}Coadd_peak_schema", 

storageClass="PeakCatalog" 

) 

mergedDetections = cT.Input( 

doc="Detection catalog merged across bands", 

name="{inputCoaddName}Coadd_mergeDet", 

storageClass="SourceCatalog", 

dimensions=("tract", "patch", "skymap") 

) 

coadds = cT.Input( 

doc="Exposure on which to run deblending", 

name="{inputCoaddName}Coadd_calexp", 

storageClass="ExposureF", 

multiple=True, 

dimensions=("tract", "patch", "abstract_filter", "skymap") 

) 

outputSchema = cT.InitOutput( 

doc="Output of the schema used in deblending task", 

name="{outputCoaddName}Coadd_deblendedModel_schema", 

storageClass="SourceCatalog" 

) 

fluxCatalogs = cT.Output( 

doc="Flux catalogs produced by multiband deblending, not written " 

"if conserve flux is turned off", 

name="{outputCoaddName}Coadd_deblendedFlux", 

storageClass="SourceCatalog", 

dimensions=("tract", "patch", "abstract_filter", "skymap") 

) 

templateCatalogs = cT.Output( 

doc="Template catalogs produced by multiband deblending", 

name="{outputCoaddName}Coadd_deblendedModel", 

storageClass="SourceCatalog", 

dimensions=("tract", "patch", "abstract_filter", "skymap") 

) 

 

def __init__(self, *, config=None): 

super().__init__(config=config) 

if not config.multibandDeblend.conserveFlux: 

self.outputs -= set(("fluxCatalogs",)) 

 

 

class DeblendCoaddSourcesMultiConfig(PipelineTaskConfig, 

pipelineConnections=DeblendCoaddSourcesMultiConnections): 

multibandDeblend = ConfigurableField( 

target=MultibandDeblendTask, 

doc="Task to deblend an images in multiple bands" 

) 

 

 

class DeblendCoaddSourcesBaseTask(PipelineTask): 

def __init__(self, initInputs, **kwargs): 

super().__init__(initInputs=initInputs, **kwargs) 

schema = initInputs["inputSchema"].schema 

self.peakSchema = initInputs["peakSchema"].schema 

self.schemaMapper = afwTable.SchemaMapper(schema) 

self.schemaMapper.addMinimalSchema(schema) 

self.schema = self.schemaMapper.getOutputSchema() 

 

def runQuantum(self, butlerQC, inputRefs, outputRefs): 

inputs = butlerQC.get(inputRefs) 

packedId, maxBits = butlerQC.quantum.dataId.pack("tract_patch", returnMaxBits=True) 

inputs["idFactory"] = afwTable.IdFactory.makeSource(packedId, 64 - maxBits) 

outputs = self.run(**inputs) 

butlerQC.put(outputs, outputRefs) 

 

def _makeSourceCatalog(self, mergedDetections, idFactory): 

table = afwTable.SourceTable.make(self.schema, idFactory) 

sources = afwTable.SourceCatalog(table) 

sources.extend(mergedDetections, self.schemaMapper) 

return sources 

 

 

class DeblendCoaddSourcesSingleTask(DeblendCoaddSourcesBaseTask): 

ConfigClass = DeblendCoaddSourcesSingleConfig 

_DefaultName = "deblendCoaddSourcesSingle" 

 

def __init__(self, initInputs, **kwargs): 

super().__init__(initInputs=initInputs, **kwargs) 

self.makeSubtask("singleBandDeblend", schema=self.schema, peakSchema=self.peakSchema) 

self.outputSchema = afwTable.SourceCatalog(self.schema) 

 

def run(self, coadd, mergedDetections, idFactory): 

sources = self._makeSourceCatalog(mergedDetections, idFactory) 

self.singleBandDeblend.run(coadd, sources) 

if not sources.isContiguous(): 

sources = sources.copy(deep=True) 

return Struct(measureCatalog=sources) 

 

 

class DeblendCoaddSourcesMultiTask(DeblendCoaddSourcesBaseTask): 

ConfigClass = DeblendCoaddSourcesMultiConfig 

_DefaultName = "deblendCoaddSourcesMulti" 

 

def __init__(self, initInputs, **kwargs): 

super().__init__(initInputs=initInputs, **kwargs) 

self.makeSubtask("multibandDeblend", schema=self.schema, peakSchema=self.peakSchema) 

self.outputSchema = afwTable.SourceCatalog(self.schema) 

 

def runQuantum(self, butlerQC, inputRefs, outputRefs): 

inputs = butlerQC.get(inputRefs) 

packedId, maxBits = butlerQC.quantum.dataId.pack("tract_patch", returnMaxBits=True) 

inputs["idFactory"] = afwTable.IdFactory.makeSource(packedId, 64 - maxBits) 

inputs["filters"] = [dRef.dataId["abstract_filter"] for dRef in inputRefs.coadds] 

outputs = self.run(**inputs) 

butlerQC.put(outputs, outputRefs) 

 

def run(self, coadds, filters, mergedDetections, idFactory): 

sources = self._makeSourceCatalog(mergedDetections, idFactory) 

multiExposure = afwImage.MultibandExposure.fromExposures(filters, coadds) 

fluxCatalogs, templateCatalogs = self.multibandDeblend.run(multiExposure, sources) 

retStruct = Struct(templateCatalogs) 

if self.config.multibandDeblend.conserveFlux: 

retStruct.fluxCatalogs = fluxCatalogs 

return retStruct