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# This file is part of meas_base. 

# 

# Developed for the LSST Data Management System. 

# This product includes software developed by the LSST Project 

# (https://www.lsst.org). 

# See the COPYRIGHT file at the top-level directory of this distribution 

# for details of code ownership. 

# 

# This program is free software: you can redistribute it and/or modify 

# it under the terms of the GNU General Public License as published by 

# the Free Software Foundation, either version 3 of the License, or 

# (at your option) any later version. 

# 

# This program is distributed in the hope that it will be useful, 

# but WITHOUT ANY WARRANTY; without even the implied warranty of 

# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 

# GNU General Public License for more details. 

# 

# You should have received a copy of the GNU General Public License 

# along with this program. If not, see <https://www.gnu.org/licenses/>. 

 

import unittest 

 

import numpy as np 

 

import lsst.utils.tests 

import lsst.geom 

import lsst.meas.base.tests 

import lsst.afw.image as afwImage 

import lsst.afw.table as afwTable 

import lsst.meas.base.applyApCorr as applyApCorr 

from lsst.afw.math import ChebyshevBoundedField 

from lsst.meas.base.apCorrRegistry import addApCorrName 

 

 

def initializeSourceCatalog(schema=None, name=None, instFlux=None, sigma=None, centroid=None): 

instFluxName = name + "_instFlux" 

instFluxErrName = name + "_instFluxErr" 

instFluxKey = schema.find(instFluxName).key 

centroidKey = afwTable.Point2DKey(schema["slot_Centroid"]) 

sourceCat = afwTable.SourceCatalog(schema) 

source = sourceCat.addNew() 

source.set(instFluxKey, instFlux) 

source.set(instFluxErrName, sigma) 

source.set(centroidKey, centroid) 

return(sourceCat) 

 

 

class ApplyApCorrTestCase(lsst.meas.base.tests.AlgorithmTestCase, lsst.utils.tests.TestCase): 

 

def setUp(self): 

schema = afwTable.SourceTable.makeMinimalSchema() 

names = ["test2", "test"] 

for name in names: 

addApCorrName(name) 

schema.addField(name + "_instFlux", type=np.float64) 

schema.addField(name + "_instFluxErr", type=np.float64) 

schema.addField(name + "_flag", type=np.float64) 

schema.addField(name + "_Centroid_x", type=np.float64) 

schema.addField(name + "_Centroid_y", type=np.float64) 

schema.getAliasMap().set('slot_Centroid', name + '_Centroid') 

self.ap_corr_task = applyApCorr.ApplyApCorrTask(schema=schema) 

self.name = name # just use 'test' prefix for most of the tests 

self.schema = schema 

 

def tearDown(self): 

del self.schema 

del self.ap_corr_task 

 

def testAddFields(self): 

# Check that the required fields have been added to the schema 

self.assertIn(self.name + "_apCorr", self.schema.getNames()) 

self.assertIn(self.name + "_apCorrErr", self.schema.getNames()) 

self.assertIn(self.name + "_flag_apCorr", self.schema.getNames()) 

self.assertLess(self.schema.find("test_apCorr").key.getOffset(), 

self.schema.find("test2_apCorr").key.getOffset()) 

 

def testSuccessUnflagged(self): 

# Check that the aperture correction flag is set to False if aperture 

# correction was successfully run 

flagName = self.name + "_flag_apCorr" 

flagKey = self.schema.find(flagName).key 

source_test_instFlux = 5.1 

source_test_centroid = lsst.geom.Point2D(5, 7.1) 

sourceCat = initializeSourceCatalog(schema=self.schema, name=self.name, instFlux=source_test_instFlux, 

sigma=0, centroid=source_test_centroid) 

instFluxName = self.name + "_instFlux" 

instFluxErrName = self.name + "_instFluxErr" 

 

apCorrMap = afwImage.ApCorrMap() 

bbox = lsst.geom.Box2I(lsst.geom.Point2I(0, 0), lsst.geom.ExtentI(10, 10)) 

coefficients = np.ones((1, 1), dtype=np.float64) 

coefficients_sigma = np.zeros((1, 1), dtype=np.float64) 

apCorrMap[instFluxName] = ChebyshevBoundedField(bbox, coefficients) 

apCorrMap[instFluxErrName] = ChebyshevBoundedField(bbox, coefficients_sigma) 

self.ap_corr_task.run(sourceCat, apCorrMap) 

self.assertFalse(sourceCat[flagKey]) 

 

def testFailureFlagged(self): 

# Check that aperture correction flag is set to True if aperture 

# correction is invalid (negative) 

flagName = self.name + "_flag_apCorr" 

flagKey = self.schema.find(flagName).key 

source_test_instFlux = 5.2 

source_test_centroid = lsst.geom.Point2D(5, 7.1) 

sourceCat = initializeSourceCatalog(schema=self.schema, name=self.name, instFlux=source_test_instFlux, 

sigma=0, centroid=source_test_centroid) 

instFluxName = self.name + "_instFlux" 

instFluxErrName = self.name + "_instFluxErr" 

 

apCorrMap = afwImage.ApCorrMap() 

bbox = lsst.geom.Box2I(lsst.geom.Point2I(0, 0), lsst.geom.ExtentI(10, 10)) 

coefficients = -(np.ones((1, 1), dtype=np.float64)) 

coefficients_sigma = np.zeros((1, 1), dtype=np.float64) 

apCorrMap[instFluxName] = ChebyshevBoundedField(bbox, coefficients) 

apCorrMap[instFluxErrName] = ChebyshevBoundedField(bbox, coefficients_sigma) 

self.ap_corr_task.run(sourceCat, apCorrMap) 

self.assertTrue(sourceCat[flagKey]) 

 

def testCatFluxUnchanged(self): 

# Pick arbitrary but unique values for the test case 

source_test_instFlux = 5.3 

source_test_centroid = lsst.geom.Point2D(5, 7.1) 

sourceCat = initializeSourceCatalog(schema=self.schema, name=self.name, instFlux=source_test_instFlux, 

sigma=0, centroid=source_test_centroid) 

instFluxName = self.name + "_instFlux" 

instFluxErrName = self.name + "_instFluxErr" 

instFluxKey = self.schema.find(instFluxName).key 

 

apCorrMap = afwImage.ApCorrMap() 

bbox = lsst.geom.Box2I(lsst.geom.Point2I(0, 0), lsst.geom.ExtentI(10, 10)) 

coefficients = np.ones((1, 1), dtype=np.float64) 

coefficients_sigma = np.zeros((1, 1), dtype=np.float64) 

apCorrMap[instFluxName] = ChebyshevBoundedField(bbox, coefficients) 

apCorrMap[instFluxErrName] = ChebyshevBoundedField(bbox, coefficients_sigma) 

self.ap_corr_task.run(sourceCat, apCorrMap) 

 

self.assertEqual(sourceCat[instFluxKey], source_test_instFlux) 

 

def testCatFluxHalf(self): 

# Pick arbitrary but unique values for the test case 

source_test_instFlux = 5.4 

source_test_centroid = lsst.geom.Point2D(5, 7.1) 

sourceCat = initializeSourceCatalog(schema=self.schema, name=self.name, instFlux=source_test_instFlux, 

sigma=0, centroid=source_test_centroid) 

instFluxName = self.name + "_instFlux" 

instFluxErrName = self.name + "_instFluxErr" 

instFluxKey = self.schema.find(instFluxName).key 

 

apCorrMap = afwImage.ApCorrMap() 

bbox = lsst.geom.Box2I(lsst.geom.Point2I(0, 0), lsst.geom.ExtentI(10, 10)) 

coefficients = np.ones((1, 1), dtype=np.float64) 

coefficients /= 2. 

coefficients_sigma = np.zeros((1, 1), dtype=np.float64) 

apCorrMap[instFluxName] = ChebyshevBoundedField(bbox, coefficients) 

apCorrMap[instFluxErrName] = ChebyshevBoundedField(bbox, coefficients_sigma) 

self.ap_corr_task.run(sourceCat, apCorrMap) 

 

self.assertAlmostEqual(sourceCat[instFluxKey], source_test_instFlux / 2) 

 

def testCatFluxErr(self): 

"""Test catalog flux errors. 

 

Notes 

----- 

This test will break if ``UseNaiveFluxErr = False``~ 

 

The alternate method significantly overestimates noise, causing this 

test to fail. It is likely that this test will need to be modified if 

the noise calculation is updated. 

""" 

# Pick arbitrary but unique values for the test case 

source_test_instFlux = 5.5 

source_test_sigma = 0.23 

source_test_centroid = lsst.geom.Point2D(5, 7.3) 

sourceCat = initializeSourceCatalog(schema=self.schema, name=self.name, instFlux=source_test_instFlux, 

sigma=source_test_sigma, centroid=source_test_centroid) 

 

instFluxName = self.name + "_instFlux" 

instFluxErrName = self.name + "_instFluxErr" 

instFluxErrKey = self.schema.find(instFluxErrName).key 

 

apCorrMap = afwImage.ApCorrMap() 

bbox = lsst.geom.Box2I(lsst.geom.Point2I(0, 0), lsst.geom.ExtentI(10, 10)) 

coefficients = np.ones((1, 1), dtype=np.float64) 

coefficients_sigma = np.ones((1, 1), dtype=np.float64) 

apCorrMap[instFluxName] = ChebyshevBoundedField(bbox, coefficients) 

apCorrMap[instFluxErrName] = ChebyshevBoundedField(bbox, coefficients_sigma) 

self.ap_corr_task.run(sourceCat, apCorrMap) 

 

self.assertAlmostEqual(sourceCat[instFluxErrKey], source_test_sigma) 

 

 

class TestMemory(lsst.utils.tests.MemoryTestCase): 

pass 

 

 

def setup_module(module): 

lsst.utils.tests.init() 

 

 

202 ↛ 203line 202 didn't jump to line 203, because the condition on line 202 was never trueif __name__ == "__main__": 

lsst.utils.tests.init() 

unittest.main()