Coverage for tests/test_pipelines.py: 43%

1# This file is part of drp_pipe.

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6# See the COPYRIGHT file at the top-level directory of this distribution

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16# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the

17# GNU General Public License for more details.

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22"""Unit tests for tracking edits to drp_pipe pipelines.

23"""

25import os

26import tempfile

27import unittest

28from typing import Any

30from lsst.daf.butler import Butler, Config

31from lsst.daf.butler.tests import DatastoreMock

32from lsst.daf.butler.tests.utils import makeTestTempDir, removeTestTempDir

33from lsst.pipe.base.tests.pipelineStepTester import PipelineStepTester

35PIPELINES_DIR = os.path.join(os.path.dirname(__file__), "..", "pipelines")

36TEST_DIR = os.path.abspath(os.path.dirname(__file__))

38# mostly common inputs

39COMMON_INPUTS = {

40 "bfKernel",

41 "bias",

42 "camera",

43 "crosstalk",

44 "dark",

45 "flat",

46 "fringe",

47 "isrOverscanCorrected",

48 "raw",

49 "skyMap",

50}

52# HSC common inputs, in addition to COMMON_INPUTS

53HSC_INPUTS = {

54 "brightObjectMask",

55 "brighterFatterKernel",

56 "defects",

57 "gaia_dr2_20200414",

58 "gaia_dr3_20230707",

59 "linearizer",

60 "ps1_pv3_3pi_20170110",

61 "sky",

62 "transmission_atmosphere",

63 "transmission_filter",

64 "transmission_optics",

65 "transmission_sensor",

66 "yBackground",

67}

69# LSSTCam-imSim common inputs, in addition to COMMON_INPUTS

70LSSTCAM_IMSIM_INPUTS = {

71 "bfk",

72 "cal_ref_cat_2_2",

73 "truth_summary",

74}

76# a selection of mostly common outputs

77COMMON_OUTPUTS = {

78 "calexp",

79 "calexpBackground",

80 "ccdVisitTable",

81 "deepCoaddVisits",

82 "deepCoadd",

83 "deepCoadd_calexp",

84 "deepCoadd_calexp_background",

85 "deepCoadd_det",

86 "deepCoadd_directWarp",

87 "deepCoadd_forced_src",

88 "deepCoadd_inputMap",

89 "deepCoadd_meas",

90 "deepCoadd_measMatch",

91 "deepCoadd_measMatchFull",

92 "deepCoadd_mergeDet",

93 "deepCoadd_nImage",

94 "deepCoadd_obj",

95 "deepCoadd_psfMatchedWarp",

96 "deepCoadd_ref",

97 "deepCoadd_scarletModelData",

98 "finalized_src_table",

99 "finalVisitSummary",

100 "icExp",

101 "icExpBackground",

102 "icSrc",

103 "isolated_star_cat",

104 "isolated_star_sources",

105 "objectTable",

106 "objectTable_tract",

107 "postISRCCD",

108 "source",

109 "sourceTable",

110 "sourceTable_visit",

111 "src",

112 "srcMatch",

113 "visitSummary",

114 "visitTable",

115}

116

117# HSC common outputs, in addition to COMMON_OUTPUTS

118HSC_OUTPUTS = {

119 "calexp_skyCorr_visit_mosaic",

120 "calexpBackground_skyCorr_visit_mosaic",

121 "forced_src",

122 "preSource",

123 "preSourceTable",

124 "preSourceTable_visit",

125 "skyCorr",

126 "srcMatchFull",

127}

128

129# LSSTCam-imSim common outputs, in addition to COMMON_OUTPUTS

130LSSTCAM_IMSIM_OUTPUTS = {

131 "diaObjectTable_tract",

132 "diaSourceTable",

133 "diaSourceTable_tract",

134 "forcedSourceOnDiaObjectTable",

135 "forcedSourceOnDiaObjectTable_tract",

136 "forcedSourceTable",

137 "forcedSourceTable_tract",

138 "forced_diff",

139 "forced_diff_diaObject",

140 "forced_src",

141 "forced_src_diaObject",

142 "goodSeeingCoadd",

143 "goodSeeingCoadd_nImage",

144 "goodSeeingDiff_assocDiaSrcTable",

145 "goodSeeingDiff_diaObjTable",

146 "goodSeeingDiff_diaSrc",

147 "goodSeeingDiff_diaSrcTable",

148 "goodSeeingDiff_differenceExp",

149 "goodSeeingDiff_differenceTempExp",

150 "goodSeeingDiff_fullDiaObjTable",

151 "goodSeeingDiff_matchedExp",

152 "goodSeeingDiff_templateExp",

153 "goodSeeingVisits",

154 "mergedForcedSource",

155 "mergedForcedSourceOnDiaObject",

156}

157

158

159class PipelineTestCase(unittest.TestCase):

160 def setUp(self):

161 self.root = makeTestTempDir(TEST_DIR)

162 self.maxDiff = None

163

164 def tearDown(self):

165 removeTestTempDir(self.root)

166

167 def makeButler(self, **kwargs: Any) -> Butler:

168 """Return new Butler instance on each call."""

169 config = Config()

170

171 # make separate temporary directory for registry of this instance

172 tmpdir = tempfile.mkdtemp(dir=self.root)

173 config["registry", "db"] = f"sqlite:///{tmpdir}/gen3.sqlite3"

174 config = Butler.makeRepo(self.root, config)

175 butler = Butler.from_config(config, **kwargs)

176 DatastoreMock.apply(butler)

177 return butler

178

179 def test_decam_drp_merian(self):

180 butler = self.makeButler(writeable=True)

181 tester0 = PipelineStepTester(

182 os.path.join(PIPELINES_DIR, "DECam", "DRP-Merian.yaml"),

183 ["#step0"],

184 [

185 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),

186 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),

187 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),

188 ],

189 expected_inputs={

190 "camera",

191 "raw",

192 },

193 expected_outputs={"overscanRaw"},

194 )

195 tester0.run(butler, self)

196 tester = PipelineStepTester(

197 os.path.join(PIPELINES_DIR, "DECam", "DRP-Merian.yaml"),

198 [

199 "#step1",

200 "#step2a",

201 "#step2b",

202 "#step2d",

203 "#step2e",

204 "#step3",

205 ],

206 [

207 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),

208 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),

209 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),

210 ],

211 expected_inputs=COMMON_INPUTS

212 | {

213 "defects",

214 "gaia_dr2_20200414",

215 "gaia_dr3_20230707",

216 "linearizer",

217 "overscanRaw",

218 "ps1_pv3_3pi_20170110",

219 },

220 expected_outputs=COMMON_OUTPUTS

221 | {

222 "goodSeeingCoadd",

223 "goodSeeingCoadd_nImage",

224 "goodSeeingVisits",

225 "preSource",

226 "preSourceTable",

227 "preSourceTable_visit",

228 "srcMatchFull",

229 },

230 )

231 tester.run(butler, self)

232

233 def test_hsc_drp_ci_hsc(self):

234 butler = self.makeButler(writeable=True)

235 tester = PipelineStepTester(

236 os.path.join(PIPELINES_DIR, "HSC", "DRP-ci_hsc.yaml"),

237 [""],

238 [

239 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),

240 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),

241 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),

242 ],

243 expected_inputs=COMMON_INPUTS

244 | HSC_INPUTS

245 | {"jointcalPhotoCalibCatalog", "jointcalSkyWcsCatalog"},

246 expected_outputs=COMMON_OUTPUTS

247 | HSC_OUTPUTS

248 | {

249 "diaObjectTable_tract",

250 "diaSourceTable",

251 "diaSourceTable_tract",

252 "forcedSourceOnDiaObjectTable",

253 "forcedSourceOnDiaObjectTable_tract",

254 "forcedSourceTable",

255 "forcedSourceTable_tract",

256 "forced_diff",

257 "forced_diff_diaObject",

258 "forced_src_diaObject",

259 "goodSeeingCoadd",

260 "goodSeeingCoadd_nImage",

261 "goodSeeingDiff_assocDiaSrcTable",

262 "goodSeeingDiff_diaObjTable",

263 "goodSeeingDiff_diaSrc",

264 "goodSeeingDiff_diaSrcTable",

265 "goodSeeingDiff_differenceExp",

266 "goodSeeingDiff_differenceTempExp",

267 "goodSeeingDiff_fullDiaObjTable",

268 "goodSeeingDiff_matchedExp",

269 "goodSeeingDiff_templateExp",

270 "goodSeeingVisits",

271 "mergedForcedSource",

272 "mergedForcedSourceOnDiaObject",

273 "objectTable_tract_astrometryRefCat_match",

274 "sourceTable_visit_astrometryRefCat_match",

275 },

276 )

277 tester.run(butler, self)

278

279 def test_hsc_drp_prod(self):

280 butler = self.makeButler(writeable=True)

281 tester = PipelineStepTester(

282 os.path.join(PIPELINES_DIR, "HSC", "DRP-Prod.yaml"),

283 [

284 "#step1",

285 "#step2a",

286 "#step2b",

287 "#step2c",

288 "#step2d",

289 "#step2e",

290 "#step3",

291 "#step4",

292 "#step7",

293 ],

294 [

295 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),

296 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),

297 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),

298 ],

299 expected_inputs=COMMON_INPUTS | HSC_INPUTS | {"fgcmLookUpTable"},

300 expected_outputs=COMMON_OUTPUTS

301 | HSC_OUTPUTS

302 | {

303 "fgcmAtmosphereParameters6",

304 "fgcmFitParameters0",

305 "fgcmFitParameters1",

306 "fgcmFitParameters2",

307 "fgcmFitParameters3",

308 "fgcmFitParameters4",

309 "fgcmFitParameters5",

310 "fgcmFitParameters6",

311 "fgcmFlaggedStars0",

312 "fgcmFlaggedStars1",

313 "fgcmFlaggedStars2",

314 "fgcmFlaggedStars3",

315 "fgcmFlaggedStars4",

316 "fgcmFlaggedStars5",

317 "fgcmFlaggedStars6",

318 "fgcm_reference_stars",

319 "fgcmStandardStars6",

320 "fgcm_star_ids",

321 "fgcm_star_observations",

322 "fgcmZeropoints6",

323 "transmission_atmosphere_fgcm",

324 },

325 )

326 tester.run(butler, self)

327

328 def test_hsc_drp_rc2(self):

329 butler = self.makeButler(writeable=True)

330 tester = PipelineStepTester(

331 os.path.join(PIPELINES_DIR, "HSC", "DRP-RC2.yaml"),

332 [

333 "#step1",

334 "#step2a",

335 "#step2b",

336 "#step2cde",

337 "#step3",

338 "#step4",

339 "#step5",

340 "#step6",

341 "#step7",

342 ],

343 [

344 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),

345 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),

346 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),

347 ],

348 expected_inputs=COMMON_INPUTS | HSC_INPUTS | {"fgcmLookUpTable"},

349 expected_outputs=COMMON_OUTPUTS

350 | HSC_OUTPUTS

351 | {

352 "diaObjectTable_tract",

353 "diaSourceTable",

354 "diaSourceTable_tract",

355 "fgcmAtmosphereParameters4",

356 "fgcmFitParameters0",

357 "fgcmFitParameters1",

358 "fgcmFitParameters2",

359 "fgcmFitParameters3",

360 "fgcmFitParameters4",

361 "fgcmFlaggedStars0",

362 "fgcmFlaggedStars1",

363 "fgcmFlaggedStars2",

364 "fgcmFlaggedStars3",

365 "fgcmFlaggedStars4",

366 "fgcm_reference_stars",

367 "fgcmStandardStars4",

368 "fgcm_star_ids",

369 "fgcm_star_observations",

370 "fgcmZeropoints4",

371 "forcedSourceOnDiaObjectTable",

372 "forcedSourceOnDiaObjectTable_tract",

373 "forcedSourceTable",

374 "forcedSourceTable_tract",

375 "forced_diff",

376 "forced_diff_diaObject",

377 "forced_src_diaObject",

378 "goodSeeingCoadd",

379 "goodSeeingCoadd_nImage",

380 "goodSeeingDiff_assocDiaSrcTable",

381 "goodSeeingDiff_diaObjTable",

382 "goodSeeingDiff_diaSrc",

383 "goodSeeingDiff_diaSrcTable",

384 "goodSeeingDiff_differenceExp",

385 "goodSeeingDiff_differenceTempExp",

386 "goodSeeingDiff_fullDiaObjTable",

387 "goodSeeingDiff_matchedExp",

388 "goodSeeingDiff_templateExp",

389 "goodSeeingVisits",

390 "mergedForcedSource",

391 "mergedForcedSourceOnDiaObject",

392 "transmission_atmosphere_fgcm",

393 },

394 )

395 tester.run(butler, self)

396

397 def test_hsc_drp_rc2_subset(self):

398 butler = self.makeButler(writeable=True)

399 tester = PipelineStepTester(

400 os.path.join(PIPELINES_DIR, "HSC", "DRP-RC2_subset.yaml"),

401 [

402 "#nightlyStep1",

403 "#nightlyStep2a",

404 "#nightlyStep2b",

405 "#nightlyStep2c",

406 "#nightlyStep2d",

407 "#nightlyStep3",

408 "#nightlyStep4",

409 "#nightlyStep5",

410 ],

411 [

412 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),

413 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),

414 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),

415 ],

416 expected_inputs=COMMON_INPUTS | HSC_INPUTS | {"fgcmLookUpTable"},

417 expected_outputs=COMMON_OUTPUTS

418 | HSC_OUTPUTS

419 | {

420 "fgcmAtmosphereParameters4",

421 "fgcmFitParameters0",

422 "fgcmFitParameters1",

423 "fgcmFitParameters2",

424 "fgcmFitParameters3",

425 "fgcmFitParameters4",

426 "fgcmFlaggedStars0",

427 "fgcmFlaggedStars1",

428 "fgcmFlaggedStars2",

429 "fgcmFlaggedStars3",

430 "fgcmFlaggedStars4",

431 "fgcm_reference_stars",

432 "fgcmStandardStars4",

433 "fgcm_star_ids",

434 "fgcm_star_observations",

435 "fgcmZeropoints4",

436 "transmission_atmosphere_fgcm",

437 },

438 )

439 tester.run(butler, self)

440

441 def test_lsstcam_imsim_drp_ci_imsim(self):

442 butler = self.makeButler(writeable=True)

443 tester = PipelineStepTester(

444 os.path.join(PIPELINES_DIR, "LSSTCam-imSim", "DRP-ci_imsim.yaml"),

445 [f"#step{N}" for N in range(1, 9)],

446 [

447 ("cal_ref_cat_2_2", {"htm7"}, "SimpleCatalog", False),

448 ],

449 expected_inputs=COMMON_INPUTS | LSSTCAM_IMSIM_INPUTS,

450 expected_outputs=COMMON_OUTPUTS | LSSTCAM_IMSIM_OUTPUTS,

451 )

452 tester.run(butler, self)

453

454 def test_lsstcam_imsim_drp_test_med_1(self):

455 butler = self.makeButler(writeable=True)

456 tester = PipelineStepTester(

457 os.path.join(PIPELINES_DIR, "LSSTCam-imSim", "DRP-test-med-1.yaml"),

458 [f"#step{N}" for N in range(1, 9)],

459 [

460 ("cal_ref_cat_2_2", {"htm7"}, "SimpleCatalog", False),

461 ],

462 expected_inputs=COMMON_INPUTS | LSSTCAM_IMSIM_INPUTS,

463 expected_outputs=COMMON_OUTPUTS | LSSTCAM_IMSIM_OUTPUTS,

464 )

465 tester.run(butler, self)

466

467

468if __name__ == "__main__": 468 ↛ 469line 468 didn't jump to line 469, because the condition on line 468 was never true

469 unittest.main()