Coverage for tests/test_pipelines.py: 43%
63 statements
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1# This file is part of drp_pipe.
2#
3# Developed for the LSST Data Management System.
4# This product includes software developed by the LSST Project
5# (http://www.lsst.org).
6# See the COPYRIGHT file at the top-level directory of this distribution
7# for details of code ownership.
8#
9# This program is free software: you can redistribute it and/or modify
10# it under the terms of the GNU General Public License as published by
11# the Free Software Foundation, either version 3 of the License, or
12# (at your option) any later version.
13#
14# This program is distributed in the hope that it will be useful,
15# but WITHOUT ANY WARRANTY; without even the implied warranty of
16# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17# GNU General Public License for more details.
18#
19# You should have received a copy of the GNU General Public License
20# along with this program. If not, see <http://www.gnu.org/licenses/>.
22"""Unit tests for tracking edits to drp_pipe pipelines.
23"""
25import os
26import tempfile
27import unittest
28from typing import Any
30from lsst.daf.butler import Butler, Config
31from lsst.daf.butler.tests import DatastoreMock
32from lsst.daf.butler.tests.utils import makeTestTempDir, removeTestTempDir
33from lsst.pipe.base.tests.pipelineStepTester import PipelineStepTester
35PIPELINES_DIR = os.path.join(os.path.dirname(__file__), "..", "pipelines")
36TEST_DIR = os.path.abspath(os.path.dirname(__file__))
38# mostly common inputs
39COMMON_INPUTS = {
40 "bfKernel",
41 "bias",
42 "camera",
43 "crosstalk",
44 "dark",
45 "flat",
46 "fringe",
47 "isrOverscanCorrected",
48 "raw",
49 "skyMap",
50}
52# HSC common inputs, in addition to COMMON_INPUTS
53HSC_INPUTS = {
54 "brightObjectMask",
55 "brighterFatterKernel",
56 "defects",
57 "gaia_dr2_20200414",
58 "gaia_dr3_20230707",
59 "linearizer",
60 "ps1_pv3_3pi_20170110",
61 "sky",
62 "transmission_atmosphere",
63 "transmission_filter",
64 "transmission_optics",
65 "transmission_sensor",
66 "yBackground",
67}
69# LSSTCam-imSim common inputs, in addition to COMMON_INPUTS
70LSSTCAM_IMSIM_INPUTS = {
71 "bfk",
72 "cal_ref_cat_2_2",
73 "truth_summary",
74}
76# a selection of mostly common outputs
77COMMON_OUTPUTS = {
78 "calexp",
79 "calexpBackground",
80 "ccdVisitTable",
81 "deepCoaddVisits",
82 "deepCoadd",
83 "deepCoadd_calexp",
84 "deepCoadd_calexp_background",
85 "deepCoadd_det",
86 "deepCoadd_directWarp",
87 "deepCoadd_forced_src",
88 "deepCoadd_inputMap",
89 "deepCoadd_meas",
90 "deepCoadd_measMatch",
91 "deepCoadd_measMatchFull",
92 "deepCoadd_mergeDet",
93 "deepCoadd_nImage",
94 "deepCoadd_obj",
95 "deepCoadd_psfMatchedWarp",
96 "deepCoadd_ref",
97 "deepCoadd_scarletModelData",
98 "finalized_src_table",
99 "finalVisitSummary",
100 "icExp",
101 "icExpBackground",
102 "icSrc",
103 "isolated_star_cat",
104 "isolated_star_sources",
105 "objectTable",
106 "objectTable_tract",
107 "postISRCCD",
108 "source",
109 "sourceTable",
110 "sourceTable_visit",
111 "src",
112 "srcMatch",
113 "visitSummary",
114 "visitTable",
115}
117# HSC common outputs, in addition to COMMON_OUTPUTS
118HSC_OUTPUTS = {
119 "calexp_skyCorr_visit_mosaic",
120 "calexpBackground_skyCorr_visit_mosaic",
121 "forced_src",
122 "preSource",
123 "preSourceTable",
124 "preSourceTable_visit",
125 "skyCorr",
126 "srcMatchFull",
127}
129# LSSTCam-imSim common outputs, in addition to COMMON_OUTPUTS
130LSSTCAM_IMSIM_OUTPUTS = {
131 "diaObjectTable_tract",
132 "diaSourceTable",
133 "diaSourceTable_tract",
134 "forcedSourceOnDiaObjectTable",
135 "forcedSourceOnDiaObjectTable_tract",
136 "forcedSourceTable",
137 "forcedSourceTable_tract",
138 "forced_diff",
139 "forced_diff_diaObject",
140 "forced_src",
141 "forced_src_diaObject",
142 "goodSeeingCoadd",
143 "goodSeeingCoadd_nImage",
144 "goodSeeingDiff_assocDiaSrcTable",
145 "goodSeeingDiff_diaObjTable",
146 "goodSeeingDiff_diaSrc",
147 "goodSeeingDiff_diaSrcTable",
148 "goodSeeingDiff_differenceExp",
149 "goodSeeingDiff_differenceTempExp",
150 "goodSeeingDiff_fullDiaObjTable",
151 "goodSeeingDiff_matchedExp",
152 "goodSeeingDiff_templateExp",
153 "goodSeeingVisits",
154 "mergedForcedSource",
155 "mergedForcedSourceOnDiaObject",
156}
159class PipelineTestCase(unittest.TestCase):
160 def setUp(self):
161 self.root = makeTestTempDir(TEST_DIR)
162 self.maxDiff = None
164 def tearDown(self):
165 removeTestTempDir(self.root)
167 def makeButler(self, **kwargs: Any) -> Butler:
168 """Return new Butler instance on each call."""
169 config = Config()
171 # make separate temporary directory for registry of this instance
172 tmpdir = tempfile.mkdtemp(dir=self.root)
173 config["registry", "db"] = f"sqlite:///{tmpdir}/gen3.sqlite3"
174 config = Butler.makeRepo(self.root, config)
175 butler = Butler.from_config(config, **kwargs)
176 DatastoreMock.apply(butler)
177 return butler
179 def test_decam_drp_merian(self):
180 butler = self.makeButler(writeable=True)
181 tester0 = PipelineStepTester(
182 os.path.join(PIPELINES_DIR, "DECam", "DRP-Merian.yaml"),
183 ["#step0"],
184 [
185 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),
186 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),
187 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),
188 ],
189 expected_inputs={
190 "camera",
191 "raw",
192 },
193 expected_outputs={"overscanRaw"},
194 )
195 tester0.run(butler, self)
196 tester = PipelineStepTester(
197 os.path.join(PIPELINES_DIR, "DECam", "DRP-Merian.yaml"),
198 [
199 "#step1",
200 "#step2a",
201 "#step2b",
202 "#step2d",
203 "#step2e",
204 "#step3",
205 ],
206 [
207 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),
208 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),
209 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),
210 ],
211 expected_inputs=COMMON_INPUTS
212 | {
213 "defects",
214 "gaia_dr2_20200414",
215 "gaia_dr3_20230707",
216 "linearizer",
217 "overscanRaw",
218 "ps1_pv3_3pi_20170110",
219 },
220 expected_outputs=COMMON_OUTPUTS
221 | {
222 "goodSeeingCoadd",
223 "goodSeeingCoadd_nImage",
224 "goodSeeingVisits",
225 "preSource",
226 "preSourceTable",
227 "preSourceTable_visit",
228 "srcMatchFull",
229 },
230 )
231 tester.run(butler, self)
233 def test_hsc_drp_ci_hsc(self):
234 butler = self.makeButler(writeable=True)
235 tester = PipelineStepTester(
236 os.path.join(PIPELINES_DIR, "HSC", "DRP-ci_hsc.yaml"),
237 [""],
238 [
239 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),
240 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),
241 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),
242 ],
243 expected_inputs=COMMON_INPUTS
244 | HSC_INPUTS
245 | {"jointcalPhotoCalibCatalog", "jointcalSkyWcsCatalog"},
246 expected_outputs=COMMON_OUTPUTS
247 | HSC_OUTPUTS
248 | {
249 "diaObjectTable_tract",
250 "diaSourceTable",
251 "diaSourceTable_tract",
252 "forcedSourceOnDiaObjectTable",
253 "forcedSourceOnDiaObjectTable_tract",
254 "forcedSourceTable",
255 "forcedSourceTable_tract",
256 "forced_diff",
257 "forced_diff_diaObject",
258 "forced_src_diaObject",
259 "goodSeeingCoadd",
260 "goodSeeingCoadd_nImage",
261 "goodSeeingDiff_assocDiaSrcTable",
262 "goodSeeingDiff_diaObjTable",
263 "goodSeeingDiff_diaSrc",
264 "goodSeeingDiff_diaSrcTable",
265 "goodSeeingDiff_differenceExp",
266 "goodSeeingDiff_differenceTempExp",
267 "goodSeeingDiff_fullDiaObjTable",
268 "goodSeeingDiff_matchedExp",
269 "goodSeeingDiff_templateExp",
270 "goodSeeingVisits",
271 "mergedForcedSource",
272 "mergedForcedSourceOnDiaObject",
273 "objectTable_tract_astrometryRefCat_match",
274 "sourceTable_visit_astrometryRefCat_match",
275 },
276 )
277 tester.run(butler, self)
279 def test_hsc_drp_prod(self):
280 butler = self.makeButler(writeable=True)
281 tester = PipelineStepTester(
282 os.path.join(PIPELINES_DIR, "HSC", "DRP-Prod.yaml"),
283 [
284 "#step1",
285 "#step2a",
286 "#step2b",
287 "#step2c",
288 "#step2d",
289 "#step2e",
290 "#step3",
291 "#step4",
292 "#step7",
293 ],
294 [
295 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),
296 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),
297 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),
298 ],
299 expected_inputs=COMMON_INPUTS | HSC_INPUTS | {"fgcmLookUpTable"},
300 expected_outputs=COMMON_OUTPUTS
301 | HSC_OUTPUTS
302 | {
303 "fgcmAtmosphereParameters6",
304 "fgcmFitParameters0",
305 "fgcmFitParameters1",
306 "fgcmFitParameters2",
307 "fgcmFitParameters3",
308 "fgcmFitParameters4",
309 "fgcmFitParameters5",
310 "fgcmFitParameters6",
311 "fgcmFlaggedStars0",
312 "fgcmFlaggedStars1",
313 "fgcmFlaggedStars2",
314 "fgcmFlaggedStars3",
315 "fgcmFlaggedStars4",
316 "fgcmFlaggedStars5",
317 "fgcmFlaggedStars6",
318 "fgcm_reference_stars",
319 "fgcmStandardStars6",
320 "fgcm_star_ids",
321 "fgcm_star_observations",
322 "fgcmZeropoints6",
323 "transmission_atmosphere_fgcm",
324 },
325 )
326 tester.run(butler, self)
328 def test_hsc_drp_rc2(self):
329 butler = self.makeButler(writeable=True)
330 tester = PipelineStepTester(
331 os.path.join(PIPELINES_DIR, "HSC", "DRP-RC2.yaml"),
332 [
333 "#step1",
334 "#step2a",
335 "#step2b",
336 "#step2cde",
337 "#step3",
338 "#step4",
339 "#step5",
340 "#step6",
341 "#step7",
342 ],
343 [
344 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),
345 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),
346 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),
347 ],
348 expected_inputs=COMMON_INPUTS | HSC_INPUTS | {"fgcmLookUpTable"},
349 expected_outputs=COMMON_OUTPUTS
350 | HSC_OUTPUTS
351 | {
352 "diaObjectTable_tract",
353 "diaSourceTable",
354 "diaSourceTable_tract",
355 "fgcmAtmosphereParameters4",
356 "fgcmFitParameters0",
357 "fgcmFitParameters1",
358 "fgcmFitParameters2",
359 "fgcmFitParameters3",
360 "fgcmFitParameters4",
361 "fgcmFlaggedStars0",
362 "fgcmFlaggedStars1",
363 "fgcmFlaggedStars2",
364 "fgcmFlaggedStars3",
365 "fgcmFlaggedStars4",
366 "fgcm_reference_stars",
367 "fgcmStandardStars4",
368 "fgcm_star_ids",
369 "fgcm_star_observations",
370 "fgcmZeropoints4",
371 "forcedSourceOnDiaObjectTable",
372 "forcedSourceOnDiaObjectTable_tract",
373 "forcedSourceTable",
374 "forcedSourceTable_tract",
375 "forced_diff",
376 "forced_diff_diaObject",
377 "forced_src_diaObject",
378 "goodSeeingCoadd",
379 "goodSeeingCoadd_nImage",
380 "goodSeeingDiff_assocDiaSrcTable",
381 "goodSeeingDiff_diaObjTable",
382 "goodSeeingDiff_diaSrc",
383 "goodSeeingDiff_diaSrcTable",
384 "goodSeeingDiff_differenceExp",
385 "goodSeeingDiff_differenceTempExp",
386 "goodSeeingDiff_fullDiaObjTable",
387 "goodSeeingDiff_matchedExp",
388 "goodSeeingDiff_templateExp",
389 "goodSeeingVisits",
390 "mergedForcedSource",
391 "mergedForcedSourceOnDiaObject",
392 "transmission_atmosphere_fgcm",
393 },
394 )
395 tester.run(butler, self)
397 def test_hsc_drp_rc2_subset(self):
398 butler = self.makeButler(writeable=True)
399 tester = PipelineStepTester(
400 os.path.join(PIPELINES_DIR, "HSC", "DRP-RC2_subset.yaml"),
401 [
402 "#nightlyStep1",
403 "#nightlyStep2a",
404 "#nightlyStep2b",
405 "#nightlyStep2c",
406 "#nightlyStep2d",
407 "#nightlyStep3",
408 "#nightlyStep4",
409 "#nightlyStep5",
410 ],
411 [
412 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),
413 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),
414 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),
415 ],
416 expected_inputs=COMMON_INPUTS | HSC_INPUTS | {"fgcmLookUpTable"},
417 expected_outputs=COMMON_OUTPUTS
418 | HSC_OUTPUTS
419 | {
420 "fgcmAtmosphereParameters4",
421 "fgcmFitParameters0",
422 "fgcmFitParameters1",
423 "fgcmFitParameters2",
424 "fgcmFitParameters3",
425 "fgcmFitParameters4",
426 "fgcmFlaggedStars0",
427 "fgcmFlaggedStars1",
428 "fgcmFlaggedStars2",
429 "fgcmFlaggedStars3",
430 "fgcmFlaggedStars4",
431 "fgcm_reference_stars",
432 "fgcmStandardStars4",
433 "fgcm_star_ids",
434 "fgcm_star_observations",
435 "fgcmZeropoints4",
436 "transmission_atmosphere_fgcm",
437 },
438 )
439 tester.run(butler, self)
441 def test_lsstcam_imsim_drp_ci_imsim(self):
442 butler = self.makeButler(writeable=True)
443 tester = PipelineStepTester(
444 os.path.join(PIPELINES_DIR, "LSSTCam-imSim", "DRP-ci_imsim.yaml"),
445 [f"#step{N}" for N in range(1, 9)],
446 [
447 ("cal_ref_cat_2_2", {"htm7"}, "SimpleCatalog", False),
448 ],
449 expected_inputs=COMMON_INPUTS | LSSTCAM_IMSIM_INPUTS,
450 expected_outputs=COMMON_OUTPUTS | LSSTCAM_IMSIM_OUTPUTS,
451 )
452 tester.run(butler, self)
454 def test_lsstcam_imsim_drp_test_med_1(self):
455 butler = self.makeButler(writeable=True)
456 tester = PipelineStepTester(
457 os.path.join(PIPELINES_DIR, "LSSTCam-imSim", "DRP-test-med-1.yaml"),
458 [f"#step{N}" for N in range(1, 9)],
459 [
460 ("cal_ref_cat_2_2", {"htm7"}, "SimpleCatalog", False),
461 ],
462 expected_inputs=COMMON_INPUTS | LSSTCAM_IMSIM_INPUTS,
463 expected_outputs=COMMON_OUTPUTS | LSSTCAM_IMSIM_OUTPUTS,
464 )
465 tester.run(butler, self)
468if __name__ == "__main__": 468 ↛ 469line 468 didn't jump to line 469, because the condition on line 468 was never true
469 unittest.main()