Coverage for tests/test_pipelines.py: 42%
65 statements
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1# This file is part of drp_pipe.
2#
3# Developed for the LSST Data Management System.
4# This product includes software developed by the LSST Project
5# (http://www.lsst.org).
6# See the COPYRIGHT file at the top-level directory of this distribution
7# for details of code ownership.
8#
9# This program is free software: you can redistribute it and/or modify
10# it under the terms of the GNU General Public License as published by
11# the Free Software Foundation, either version 3 of the License, or
12# (at your option) any later version.
13#
14# This program is distributed in the hope that it will be useful,
15# but WITHOUT ANY WARRANTY; without even the implied warranty of
16# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17# GNU General Public License for more details.
18#
19# You should have received a copy of the GNU General Public License
20# along with this program. If not, see <http://www.gnu.org/licenses/>.
22"""Unit tests for tracking edits to drp_pipe pipelines.
23"""
25import os
26import tempfile
27import unittest
28from typing import Any
30from lsst.daf.butler import Butler, ButlerConfig, Registry, RegistryConfig
31from lsst.daf.butler.tests import DatastoreMock
32from lsst.daf.butler.tests.utils import makeTestTempDir, removeTestTempDir
33from lsst.pipe.base.tests.pipelineStepTester import PipelineStepTester
35PIPELINES_DIR = os.path.join(os.path.dirname(__file__), "..", "pipelines")
36TEST_DIR = os.path.abspath(os.path.dirname(__file__))
38# mostly common inputs
39COMMON_INPUTS = {
40 "bfKernel",
41 "bias",
42 "camera",
43 "crosstalk",
44 "dark",
45 "flat",
46 "fringe",
47 "isrOverscanCorrected",
48 "raw",
49 "skyMap",
50}
52# HSC common inputs, in addition to COMMON_INPUTS
53HSC_INPUTS = {
54 "brightObjectMask",
55 "brighterFatterKernel",
56 "defects",
57 "gaia_dr2_20200414",
58 "gaia_dr3_20230707",
59 "linearizer",
60 "ps1_pv3_3pi_20170110",
61 "sky",
62 "transmission_atmosphere",
63 "transmission_filter",
64 "transmission_optics",
65 "transmission_sensor",
66 "yBackground",
67}
69# LSSTCam-imSim common inputs, in addition to COMMON_INPUTS
70LSSTCAM_IMSIM_INPUTS = {
71 "bfk",
72 "cal_ref_cat_2_2",
73 "truth_summary",
74}
76# a selection of mostly common outputs
77COMMON_OUTPUTS = {
78 "calexp",
79 "calexpBackground",
80 "ccdVisitTable",
81 "deepCoadd",
82 "deepCoadd_calexp",
83 "deepCoadd_calexp_background",
84 "deepCoadd_det",
85 "deepCoadd_directWarp",
86 "deepCoadd_forced_src",
87 "deepCoadd_inputMap",
88 "deepCoadd_meas",
89 "deepCoadd_measMatch",
90 "deepCoadd_measMatchFull",
91 "deepCoadd_mergeDet",
92 "deepCoadd_nImage",
93 "deepCoadd_obj",
94 "deepCoadd_psfMatchedWarp",
95 "deepCoadd_ref",
96 "deepCoadd_scarletModelData",
97 "finalized_src_table",
98 "finalVisitSummary",
99 "icExp",
100 "icExpBackground",
101 "icSrc",
102 "isolated_star_cat",
103 "isolated_star_sources",
104 "objectTable",
105 "objectTable_tract",
106 "postISRCCD",
107 "source",
108 "sourceTable",
109 "sourceTable_visit",
110 "src",
111 "srcMatch",
112 "visitSummary",
113 "visitTable",
114}
116# HSC common outputs, in addition to COMMON_OUTPUTS
117HSC_OUTPUTS = {
118 "calexp_skyCorr_visit_mosaic",
119 "calexpBackground_skyCorr_visit_mosaic",
120 "forced_src",
121 "preSource",
122 "preSourceTable",
123 "preSourceTable_visit",
124 "skyCorr",
125 "srcMatchFull",
126}
128# LSSTCam-imSim common outputs, in addition to COMMON_OUTPUTS
129LSSTCAM_IMSIM_OUTPUTS = {
130 "diaObjectTable_tract",
131 "diaSourceTable",
132 "diaSourceTable_tract",
133 "forcedSourceOnDiaObjectTable",
134 "forcedSourceOnDiaObjectTable_tract",
135 "forcedSourceTable",
136 "forcedSourceTable_tract",
137 "forced_diff",
138 "forced_diff_diaObject",
139 "forced_src",
140 "forced_src_diaObject",
141 "goodSeeingCoadd",
142 "goodSeeingCoadd_nImage",
143 "goodSeeingDiff_assocDiaSrcTable",
144 "goodSeeingDiff_diaObjTable",
145 "goodSeeingDiff_diaSrc",
146 "goodSeeingDiff_diaSrcTable",
147 "goodSeeingDiff_differenceExp",
148 "goodSeeingDiff_differenceTempExp",
149 "goodSeeingDiff_fullDiaObjTable",
150 "goodSeeingDiff_matchedExp",
151 "goodSeeingDiff_templateExp",
152 "goodSeeingVisits",
153 "mergedForcedSource",
154 "mergedForcedSourceOnDiaObject",
155}
158class PipelineTestCase(unittest.TestCase):
159 def setUp(self):
160 self.root = makeTestTempDir(TEST_DIR)
161 self.maxDiff = None
163 def tearDown(self):
164 removeTestTempDir(self.root)
166 def makeButler(self, **kwargs: Any) -> Butler:
167 """Return new Butler instance on each call."""
168 config = ButlerConfig()
170 # make separate temporary directory for registry of this instance
171 tmpdir = tempfile.mkdtemp(dir=self.root)
172 config["registry", "db"] = f"sqlite:///{tmpdir}/gen3.sqlite3"
173 config["root"] = self.root
175 # have to make a registry first
176 registryConfig = RegistryConfig(config.get("registry"))
177 Registry.createFromConfig(registryConfig)
179 butler = Butler(config, **kwargs)
180 DatastoreMock.apply(butler)
181 return butler
183 def test_decam_drp_merian(self):
184 butler = self.makeButler(writeable=True)
185 tester0 = PipelineStepTester(
186 os.path.join(PIPELINES_DIR, "DECam", "DRP-Merian.yaml"),
187 ["#step0"],
188 [
189 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),
190 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),
191 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),
192 ],
193 expected_inputs={
194 "camera",
195 "raw",
196 },
197 expected_outputs={"overscanRaw"},
198 )
199 tester0.run(butler, self)
200 tester = PipelineStepTester(
201 os.path.join(PIPELINES_DIR, "DECam", "DRP-Merian.yaml"),
202 [
203 "#step1",
204 "#step2a",
205 "#step2b",
206 "#step2d",
207 "#step2e",
208 "#step3",
209 ],
210 [
211 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),
212 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),
213 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),
214 ],
215 expected_inputs=COMMON_INPUTS
216 | {
217 "defects",
218 "gaia_dr2_20200414",
219 "gaia_dr3_20230707",
220 "linearizer",
221 "overscanRaw",
222 "ps1_pv3_3pi_20170110",
223 },
224 expected_outputs=COMMON_OUTPUTS
225 | {
226 "goodSeeingCoadd",
227 "goodSeeingCoadd_nImage",
228 "goodSeeingVisits",
229 "preSource",
230 "preSourceTable",
231 "preSourceTable_visit",
232 "srcMatchFull",
233 },
234 )
235 tester.run(butler, self)
237 def test_hsc_drp_ci_hsc(self):
238 butler = self.makeButler(writeable=True)
239 tester = PipelineStepTester(
240 os.path.join(PIPELINES_DIR, "HSC", "DRP-ci_hsc.yaml"),
241 [""],
242 [
243 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),
244 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),
245 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),
246 ],
247 expected_inputs=COMMON_INPUTS
248 | HSC_INPUTS
249 | {"jointcalPhotoCalibCatalog", "jointcalSkyWcsCatalog"},
250 expected_outputs=COMMON_OUTPUTS
251 | HSC_OUTPUTS
252 | {
253 "diaObjectTable_tract",
254 "diaSourceTable",
255 "diaSourceTable_tract",
256 "forcedSourceOnDiaObjectTable",
257 "forcedSourceOnDiaObjectTable_tract",
258 "forcedSourceTable",
259 "forcedSourceTable_tract",
260 "forced_diff",
261 "forced_diff_diaObject",
262 "forced_src_diaObject",
263 "goodSeeingCoadd",
264 "goodSeeingCoadd_nImage",
265 "goodSeeingDiff_assocDiaSrcTable",
266 "goodSeeingDiff_diaObjTable",
267 "goodSeeingDiff_diaSrc",
268 "goodSeeingDiff_diaSrcTable",
269 "goodSeeingDiff_differenceExp",
270 "goodSeeingDiff_differenceTempExp",
271 "goodSeeingDiff_fullDiaObjTable",
272 "goodSeeingDiff_matchedExp",
273 "goodSeeingDiff_templateExp",
274 "goodSeeingVisits",
275 "mergedForcedSource",
276 "mergedForcedSourceOnDiaObject",
277 "objectTable_tract_astrometryRefCat_match",
278 "sourceTable_visit_astrometryRefCat_match",
279 },
280 )
281 tester.run(butler, self)
283 def test_hsc_drp_prod(self):
284 butler = self.makeButler(writeable=True)
285 tester = PipelineStepTester(
286 os.path.join(PIPELINES_DIR, "HSC", "DRP-Prod.yaml"),
287 [
288 "#step1",
289 "#step2a",
290 "#step2b",
291 "#step2c",
292 "#step2d",
293 "#step2e",
294 "#step3",
295 "#step4",
296 "#step7",
297 ],
298 [
299 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),
300 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),
301 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),
302 ],
303 expected_inputs=COMMON_INPUTS | HSC_INPUTS | {"fgcmLookUpTable"},
304 expected_outputs=COMMON_OUTPUTS
305 | HSC_OUTPUTS
306 | {
307 "fgcmAtmosphereParameters6",
308 "fgcmFitParameters0",
309 "fgcmFitParameters1",
310 "fgcmFitParameters2",
311 "fgcmFitParameters3",
312 "fgcmFitParameters4",
313 "fgcmFitParameters5",
314 "fgcmFitParameters6",
315 "fgcmFlaggedStars0",
316 "fgcmFlaggedStars1",
317 "fgcmFlaggedStars2",
318 "fgcmFlaggedStars3",
319 "fgcmFlaggedStars4",
320 "fgcmFlaggedStars5",
321 "fgcmFlaggedStars6",
322 "fgcm_reference_stars",
323 "fgcmStandardStars6",
324 "fgcm_star_ids",
325 "fgcm_star_observations",
326 "fgcmZeropoints6",
327 "transmission_atmosphere_fgcm",
328 },
329 )
330 tester.run(butler, self)
332 def test_hsc_drp_rc2(self):
333 butler = self.makeButler(writeable=True)
334 tester = PipelineStepTester(
335 os.path.join(PIPELINES_DIR, "HSC", "DRP-RC2.yaml"),
336 [
337 "#step1",
338 "#step2a",
339 "#step2b",
340 "#step2cde",
341 "#step3",
342 "#step4",
343 "#step5",
344 "#step6",
345 "#step7",
346 ],
347 [
348 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),
349 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),
350 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),
351 ],
352 expected_inputs=COMMON_INPUTS | HSC_INPUTS | {"fgcmLookUpTable"},
353 expected_outputs=COMMON_OUTPUTS
354 | HSC_OUTPUTS
355 | {
356 "diaObjectTable_tract",
357 "diaSourceTable",
358 "diaSourceTable_tract",
359 "fgcmAtmosphereParameters4",
360 "fgcmFitParameters0",
361 "fgcmFitParameters1",
362 "fgcmFitParameters2",
363 "fgcmFitParameters3",
364 "fgcmFitParameters4",
365 "fgcmFlaggedStars0",
366 "fgcmFlaggedStars1",
367 "fgcmFlaggedStars2",
368 "fgcmFlaggedStars3",
369 "fgcmFlaggedStars4",
370 "fgcm_reference_stars",
371 "fgcmStandardStars4",
372 "fgcm_star_ids",
373 "fgcm_star_observations",
374 "fgcmZeropoints4",
375 "forcedSourceOnDiaObjectTable",
376 "forcedSourceOnDiaObjectTable_tract",
377 "forcedSourceTable",
378 "forcedSourceTable_tract",
379 "forced_diff",
380 "forced_diff_diaObject",
381 "forced_src_diaObject",
382 "goodSeeingCoadd",
383 "goodSeeingCoadd_nImage",
384 "goodSeeingDiff_assocDiaSrcTable",
385 "goodSeeingDiff_diaObjTable",
386 "goodSeeingDiff_diaSrc",
387 "goodSeeingDiff_diaSrcTable",
388 "goodSeeingDiff_differenceExp",
389 "goodSeeingDiff_differenceTempExp",
390 "goodSeeingDiff_fullDiaObjTable",
391 "goodSeeingDiff_matchedExp",
392 "goodSeeingDiff_templateExp",
393 "goodSeeingVisits",
394 "mergedForcedSource",
395 "mergedForcedSourceOnDiaObject",
396 "transmission_atmosphere_fgcm",
397 },
398 )
399 tester.run(butler, self)
401 def test_hsc_drp_rc2_subset(self):
402 butler = self.makeButler(writeable=True)
403 tester = PipelineStepTester(
404 os.path.join(PIPELINES_DIR, "HSC", "DRP-RC2_subset.yaml"),
405 [
406 "#nightlyStep1",
407 "#nightlyStep2a",
408 "#nightlyStep2b",
409 "#nightlyStep2c",
410 "#nightlyStep2d",
411 "#nightlyStep3",
412 "#nightlyStep4",
413 "#nightlyStep5",
414 ],
415 [
416 ("ps1_pv3_3pi_20170110", {"htm7"}, "SimpleCatalog", False),
417 ("gaia_dr2_20200414", {"htm7"}, "SimpleCatalog", False),
418 ("gaia_dr3_20230707", {"htm7"}, "SimpleCatalog", False),
419 ],
420 expected_inputs=COMMON_INPUTS | HSC_INPUTS | {"fgcmLookUpTable"},
421 expected_outputs=COMMON_OUTPUTS
422 | HSC_OUTPUTS
423 | {
424 "fgcmAtmosphereParameters4",
425 "fgcmFitParameters0",
426 "fgcmFitParameters1",
427 "fgcmFitParameters2",
428 "fgcmFitParameters3",
429 "fgcmFitParameters4",
430 "fgcmFlaggedStars0",
431 "fgcmFlaggedStars1",
432 "fgcmFlaggedStars2",
433 "fgcmFlaggedStars3",
434 "fgcmFlaggedStars4",
435 "fgcm_reference_stars",
436 "fgcmStandardStars4",
437 "fgcm_star_ids",
438 "fgcm_star_observations",
439 "fgcmZeropoints4",
440 "transmission_atmosphere_fgcm",
441 },
442 )
443 tester.run(butler, self)
445 def test_lsstcam_imsim_drp_ci_imsim(self):
446 butler = self.makeButler(writeable=True)
447 tester = PipelineStepTester(
448 os.path.join(PIPELINES_DIR, "LSSTCam-imSim", "DRP-ci_imsim.yaml"),
449 [f"#step{N}" for N in range(1, 9)],
450 [
451 ("cal_ref_cat_2_2", {"htm7"}, "SimpleCatalog", False),
452 ],
453 expected_inputs=COMMON_INPUTS | LSSTCAM_IMSIM_INPUTS,
454 expected_outputs=COMMON_OUTPUTS | LSSTCAM_IMSIM_OUTPUTS,
455 )
456 tester.run(butler, self)
458 def test_lsstcam_imsim_drp_test_med_1(self):
459 butler = self.makeButler(writeable=True)
460 tester = PipelineStepTester(
461 os.path.join(PIPELINES_DIR, "LSSTCam-imSim", "DRP-test-med-1.yaml"),
462 [f"#step{N}" for N in range(1, 9)],
463 [
464 ("cal_ref_cat_2_2", {"htm7"}, "SimpleCatalog", False),
465 ],
466 expected_inputs=COMMON_INPUTS | LSSTCAM_IMSIM_INPUTS,
467 expected_outputs=COMMON_OUTPUTS | LSSTCAM_IMSIM_OUTPUTS,
468 )
469 tester.run(butler, self)
472if __name__ == "__main__": 472 ↛ 473line 472 didn't jump to line 473, because the condition on line 472 was never true
473 unittest.main()