Coverage for python/lsst/pipe/tasks/coaddBase.py: 52%
52 statements
« prev ^ index » next coverage.py v7.2.7, created at 2023-07-13 11:43 +0000
« prev ^ index » next coverage.py v7.2.7, created at 2023-07-13 11:43 +0000
1# This file is part of pipe_tasks.
2#
3# Developed for the LSST Data Management System.
4# This product includes software developed by the LSST Project
5# (https://www.lsst.org).
6# See the COPYRIGHT file at the top-level directory of this distribution
7# for details of code ownership.
8#
9# This program is free software: you can redistribute it and/or modify
10# it under the terms of the GNU General Public License as published by
11# the Free Software Foundation, either version 3 of the License, or
12# (at your option) any later version.
13#
14# This program is distributed in the hope that it will be useful,
15# but WITHOUT ANY WARRANTY; without even the implied warranty of
16# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17# GNU General Public License for more details.
18#
19# You should have received a copy of the GNU General Public License
20# along with this program. If not, see <https://www.gnu.org/licenses/>.
22__all__ = ["CoaddBaseTask", "makeSkyInfo"]
24import lsst.pex.config as pexConfig
25import lsst.afw.image as afwImage
26import lsst.pipe.base as pipeBase
27import lsst.meas.algorithms as measAlg
29from lsst.meas.algorithms import ScaleVarianceTask
30from .selectImages import PsfWcsSelectImagesTask
31from .coaddInputRecorder import CoaddInputRecorderTask
34class CoaddBaseConfig(pexConfig.Config):
35 """Configuration parameters for CoaddBaseTask
37 Configuration parameters shared between MakeCoaddTempExp and AssembleCoadd
38 """
40 coaddName = pexConfig.Field(
41 doc="Coadd name: typically one of deep or goodSeeing.",
42 dtype=str,
43 default="deep",
44 )
45 select = pexConfig.ConfigurableField(
46 doc="Image selection subtask.",
47 target=PsfWcsSelectImagesTask,
48 )
49 badMaskPlanes = pexConfig.ListField(
50 dtype=str,
51 doc="Mask planes that, if set, the associated pixel should not be included in the coaddTempExp.",
52 default=("NO_DATA",),
53 )
54 inputRecorder = pexConfig.ConfigurableField(
55 doc="Subtask that helps fill CoaddInputs catalogs added to the final Exposure",
56 target=CoaddInputRecorderTask
57 )
58 doPsfMatch = pexConfig.Field(
59 dtype=bool,
60 doc="Match to modelPsf? Sets makePsfMatched=True, makeDirect=False",
61 deprecated="This field is no longer used. Will be removed after v27.", # TODO: DM-39841
62 default=False
63 )
64 modelPsf = measAlg.GaussianPsfFactory.makeField(doc="Model Psf factory")
65 doApplyExternalPhotoCalib = pexConfig.Field(
66 dtype=bool,
67 default=False,
68 doc=("Whether to apply external photometric calibration via an "
69 "`lsst.afw.image.PhotoCalib` object. Uses the "
70 "`externalPhotoCalibName` field to determine which calibration "
71 "to load.")
72 )
73 useGlobalExternalPhotoCalib = pexConfig.Field(
74 dtype=bool,
75 default=True,
76 doc=("When using doApplyExternalPhotoCalib, use 'global' calibrations "
77 "that are not run per-tract. When False, use per-tract photometric "
78 "calibration files.")
79 )
80 externalPhotoCalibName = pexConfig.ChoiceField(
81 # TODO: Remove this config with the removal of Gen2 in DM-20572.
82 dtype=str,
83 doc=("Type of external PhotoCalib if `doApplyExternalPhotoCalib` is True. "
84 "This field is only used for Gen2 middleware."),
85 default="jointcal",
86 allowed={
87 "jointcal": "Use jointcal_photoCalib",
88 "fgcm": "Use fgcm_photoCalib",
89 "fgcm_tract": "Use fgcm_tract_photoCalib"
90 },
91 deprecated="This configuration is no longer used, and will be removed after v25.0",
92 )
93 doApplyExternalSkyWcs = pexConfig.Field(
94 dtype=bool,
95 default=False,
96 doc=("Whether to apply external astrometric calibration via an "
97 "`lsst.afw.geom.SkyWcs` object. Uses `externalSkyWcsName` "
98 "field to determine which calibration to load.")
99 )
100 useGlobalExternalSkyWcs = pexConfig.Field(
101 dtype=bool,
102 default=True,
103 doc=("When using doApplyExternalSkyWcs, use 'global' calibrations "
104 "that are not run per-tract. When False, use per-tract wcs "
105 "files.")
106 )
107 externalSkyWcsName = pexConfig.ChoiceField(
108 # TODO: Remove this config with the removal of Gen2 in DM-20572.
109 dtype=str,
110 doc=("Type of external SkyWcs if `doApplyExternalSkyWcs` is True. "
111 "This field is only used for Gen2 middleware."),
112 default="jointcal",
113 allowed={
114 "jointcal": "Use jointcal_wcs"
115 },
116 deprecated="This configuration is no longer used, and will be removed after v25.0",
117 )
118 includeCalibVar = pexConfig.Field(
119 dtype=bool,
120 doc="Add photometric calibration variance to warp variance plane.",
121 default=False
122 )
123 matchingKernelSize = pexConfig.Field( 123 ↛ exitline 123 didn't jump to the function exit
124 dtype=int,
125 doc="Size in pixels of matching kernel. Must be odd.",
126 default=21,
127 check=lambda x: x % 2 == 1
128 )
131class CoaddBaseTask(pipeBase.PipelineTask):
132 """Base class for coaddition.
134 Subclasses must specify _DefaultName
135 """
137 ConfigClass = CoaddBaseConfig
139 def __init__(self, **kwargs):
140 super().__init__(**kwargs)
141 self.makeSubtask("select")
142 self.makeSubtask("inputRecorder")
144 def getTempExpDatasetName(self, warpType="direct"):
145 """Return warp name for given warpType and task config
147 Parameters
148 ----------
149 warpType : `str`
150 Either 'direct' or 'psfMatched'.
152 Returns
153 -------
154 WarpDatasetName : `str`
155 """
156 return self.config.coaddName + "Coadd_" + warpType + "Warp"
158 def getBadPixelMask(self):
159 """Convenience method to provide the bitmask from the mask plane names
160 """
161 return afwImage.Mask.getPlaneBitMask(self.config.badMaskPlanes)
164def makeSkyInfo(skyMap, tractId, patchId):
165 """Constructs SkyInfo used by coaddition tasks for multiple
166 patchId formats.
168 Parameters
169 ----------
170 skyMap : `lsst.skyMap.SkyMap`
171 Sky map.
172 tractId : `int`
173 The ID of the tract.
174 patchId : `str` or `int` or `tuple` of `int`
175 Either Gen2-style comma delimited string (e.g. '4,5'),
176 tuple of integers (e.g (4, 5), Gen3-style integer.
178 Returns
179 -------
180 makeSkyInfo : `lsst.pipe.base.Struct`
181 pipe_base Struct with attributes:
183 ``skyMap``
184 Sky map (`lsst.skyMap.SkyMap`).
185 ``tractInfo``
186 Information for chosen tract of sky map (`lsst.skyMap.TractInfo`).
187 ``patchInfo``
188 Information about chosen patch of tract (`lsst.skyMap.PatchInfo`).
189 ``wcs``
190 WCS of tract (`lsst.afw.image.SkyWcs`).
191 ``bbox``
192 Outer bbox of patch, as an geom Box2I (`lsst.afw.geom.Box2I`).
193 """
194 tractInfo = skyMap[tractId]
196 if isinstance(patchId, str) and ',' in patchId:
197 # patch format is "xIndex,yIndex"
198 patchIndex = tuple(int(i) for i in patchId.split(","))
199 else:
200 patchIndex = patchId
202 patchInfo = tractInfo.getPatchInfo(patchIndex)
204 return pipeBase.Struct(
205 skyMap=skyMap,
206 tractInfo=tractInfo,
207 patchInfo=patchInfo,
208 wcs=tractInfo.getWcs(),
209 bbox=patchInfo.getOuterBBox(),
210 )
213def scaleVariance(maskedImage, maskPlanes, log=None):
214 """Scale the variance in a maskedImage
216 This is deprecated. Use the ScaleVarianceTask instead.
218 Parameters
219 ----------
220 maskedImage : `lsst.afw.image.MaskedImage`
221 MaskedImage to operate on; variance will be scaled.
222 maskPlanes : `list`
223 List of mask planes for pixels to reject.
224 log : `Unknown`
225 Log for reporting the renormalization factor; or None.
227 Returns
228 -------
229 task.run : `Unknown`
230 Renormalization factor.
232 Notes
233 -----
234 The variance plane in a convolved or warped image (or a coadd derived
235 from warped images) does not accurately reflect the noise properties of
236 the image because variance has been lost to covariance. This function
237 attempts to correct for this by scaling the variance plane to match
238 the observed variance in the image. This is not perfect (because we're
239 not tracking the covariance) but it's simple and is often good enough.
240 """
241 config = ScaleVarianceTask.ConfigClass()
242 config.maskPlanes = maskPlanes
243 task = ScaleVarianceTask(config=config, name="scaleVariance", log=log)
244 return task.run(maskedImage)
247def reorderAndPadList(inputList, inputKeys, outputKeys, padWith=None):
248 """Match the order of one list to another, padding if necessary
250 Parameters
251 ----------
252 inputList : `list`
253 List to be reordered and padded. Elements can be any type.
254 inputKeys : `iterable`
255 Iterable of values to be compared with outputKeys. Length must match `inputList`.
256 outputKeys : `iterable`
257 Iterable of values to be compared with inputKeys.
258 padWith : `Unknown`
259 Any value to be inserted where inputKey not in outputKeys.
261 Returns
262 -------
263 outputList : `list`
264 Copy of inputList reordered per outputKeys and padded with `padWith`
265 so that the length matches length of outputKeys.
266 """
267 outputList = []
268 for d in outputKeys:
269 if d in inputKeys:
270 outputList.append(inputList[inputKeys.index(d)])
271 else:
272 outputList.append(padWith)
273 return outputList