Coverage for tests/test_pipelines.py: 40%
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1# This file is part of drp_pipe.
2#
3# Developed for the LSST Data Management System.
4# This product includes software developed by the LSST Project
5# (http://www.lsst.org).
6# See the COPYRIGHT file at the top-level directory of this distribution
7# for details of code ownership.
8#
9# This program is free software: you can redistribute it and/or modify
10# it under the terms of the GNU General Public License as published by
11# the Free Software Foundation, either version 3 of the License, or
12# (at your option) any later version.
13#
14# This program is distributed in the hope that it will be useful,
15# but WITHOUT ANY WARRANTY; without even the implied warranty of
16# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17# GNU General Public License for more details.
18#
19# You should have received a copy of the GNU General Public License
20# along with this program. If not, see <http://www.gnu.org/licenses/>.
22"""Unit tests for tracking edits to drp_pipe pipelines.
23"""
25import os
26import tempfile
27import unittest
28from typing import Any
30from lsst.daf.butler import Butler, ButlerConfig, Registry, RegistryConfig
31from lsst.daf.butler.tests import DatastoreMock
32from lsst.daf.butler.tests.utils import makeTestTempDir, removeTestTempDir
33from lsst.pipe.base.tests.pipelineStepTester import PipelineStepTester
35PIPELINES_DIR = os.path.join(os.path.dirname(__file__), "..", "pipelines")
36TEST_DIR = os.path.abspath(os.path.dirname(__file__))
38# mostly common inputs
39COMMON_INPUTS = {
40 "bfKernel",
41 "bias",
42 "camera",
43 "crosstalk",
44 "dark",
45 "flat",
46 "fringe",
47 "isrOverscanCorrected",
48 "raw",
49 "skyMap",
50}
52# HSC common inputs, in addition to COMMON_INPUTS
53HSC_INPUTS = {
54 "brightObjectMask",
55 "brighterFatterKernel",
56 "defects",
57 "gaia_dr2_20200414",
58 "linearizer",
59 "ps1_pv3_3pi_20170110",
60 "sky",
61 "transmission_atmosphere",
62 "transmission_filter",
63 "transmission_optics",
64 "transmission_sensor",
65 "yBackground",
66}
68# LSSTCam-imSim common inputs, in addition to COMMON_INPUTS
69LSSTCAM_IMSIM_INPUTS = {
70 "bfk",
71 "cal_ref_cat_2_2",
72}
74# a selection of mostly common outputs
75COMMON_OUTPUTS = {
76 "calexp",
77 "calexpBackground",
78 "ccdVisitTable",
79 "deepCoadd",
80 "deepCoadd_calexp",
81 "deepCoadd_calexp_background",
82 "deepCoadd_det",
83 "deepCoadd_directWarp",
84 "deepCoadd_forced_src",
85 "deepCoadd_inputMap",
86 "deepCoadd_meas",
87 "deepCoadd_measMatch",
88 "deepCoadd_measMatchFull",
89 "deepCoadd_mergeDet",
90 "deepCoadd_nImage",
91 "deepCoadd_obj",
92 "deepCoadd_psfMatchedWarp",
93 "deepCoadd_ref",
94 "deepCoadd_scarletModelData",
95 "finalized_src_table",
96 "icExp",
97 "icExpBackground",
98 "icSrc",
99 "isolated_star_cat",
100 "isolated_star_sources",
101 "objectTable",
102 "objectTable_tract",
103 "postISRCCD",
104 "source",
105 "sourceTable",
106 "sourceTable_visit",
107 "src",
108 "srcMatch",
109 "visitSummary",
110 "visitTable",
111}
113# HSC common outputs, in addition to COMMON_OUTPUTS
114HSC_OUTPUTS = {
115 "calexp_camera",
116 "forced_src",
117 "preSource",
118 "preSourceTable",
119 "preSourceTable_visit",
120 "skyCorr",
121 "srcMatchFull",
122}
124# LSSTCam-imSim common outputs, in addition to COMMON_OUTPUTS
125LSSTCAM_IMSIM_OUTPUTS = {
126 "diaObjectTable_tract",
127 "diaSourceTable",
128 "diaSourceTable_tract",
129 "forcedSourceOnDiaObjectTable",
130 "forcedSourceOnDiaObjectTable_tract",
131 "forcedSourceTable",
132 "forcedSourceTable_tract",
133 "forced_diff",
134 "forced_diff_diaObject",
135 "forced_src",
136 "forced_src_diaObject",
137 "goodSeeingCoadd",
138 "goodSeeingCoadd_nImage",
139 "goodSeeingDiff_assocDiaSrcTable",
140 "goodSeeingDiff_diaObjTable",
141 "goodSeeingDiff_diaSrc",
142 "goodSeeingDiff_diaSrcTable",
143 "goodSeeingDiff_differenceExp",
144 "goodSeeingDiff_differenceTempExp",
145 "goodSeeingDiff_fullDiaObjTable",
146 "goodSeeingDiff_matchedExp",
147 "goodSeeingDiff_templateExp",
148 "goodSeeingVisits",
149 "mergedForcedSource",
150 "mergedForcedSourceOnDiaObject",
151}
154class PipelineTestCase(unittest.TestCase):
155 def setUp(self):
156 self.root = makeTestTempDir(TEST_DIR)
157 self.maxDiff = None
159 def tearDown(self):
160 removeTestTempDir(self.root)
162 def makeButler(self, **kwargs: Any) -> Butler:
163 """Return new Butler instance on each call."""
164 config = ButlerConfig()
166 # make separate temporary directory for registry of this instance
167 tmpdir = tempfile.mkdtemp(dir=self.root)
168 config["registry", "db"] = f"sqlite:///{tmpdir}/gen3.sqlite3"
169 config["root"] = self.root
171 # have to make a registry first
172 registryConfig = RegistryConfig(config.get("registry"))
173 Registry.createFromConfig(registryConfig)
175 butler = Butler(config, **kwargs)
176 DatastoreMock.apply(butler)
177 return butler
179 def test_decam_drp_merian(self):
180 butler = self.makeButler(writeable=True)
181 tester0 = PipelineStepTester(
182 os.path.join(PIPELINES_DIR, "DECam", "DRP-Merian.yaml"),
183 ["#step0"],
184 [
185 ("ps1_pv3_3pi_20170110", {"htm7"}, "Catalog", False),
186 ("gaia_dr2_20200414", {"htm7"}, "Catalog", False),
187 ],
188 expected_inputs={
189 "camera",
190 "raw",
191 },
192 expected_outputs={"overscanRaw"},
193 )
194 tester0.run(butler, self)
195 tester = PipelineStepTester(
196 os.path.join(PIPELINES_DIR, "DECam", "DRP-Merian.yaml"),
197 [
198 "#step1",
199 "#step2a",
200 "#step2b",
201 "#step2c",
202 "#step2d",
203 "#step3",
204 ],
205 [
206 ("ps1_pv3_3pi_20170110", {"htm7"}, "Catalog", False),
207 ("gaia_dr2_20200414", {"htm7"}, "Catalog", False),
208 ],
209 expected_inputs=COMMON_INPUTS
210 | {
211 "defects",
212 "gaia_dr2_20200414",
213 "linearizer",
214 "overscanRaw",
215 "ps1_pv3_3pi_20170110",
216 },
217 expected_outputs=COMMON_OUTPUTS
218 | {
219 "goodSeeingCoadd",
220 "goodSeeingCoadd_nImage",
221 "goodSeeingVisits",
222 "preSource",
223 "preSourceTable",
224 "preSourceTable_visit",
225 "srcMatchFull",
226 },
227 )
228 tester.run(butler, self)
230 def test_hsc_drp_ci_hsc(self):
231 butler = self.makeButler(writeable=True)
232 tester = PipelineStepTester(
233 os.path.join(PIPELINES_DIR, "HSC", "DRP-ci_hsc.yaml"),
234 [""],
235 [
236 ("ps1_pv3_3pi_20170110", {"htm7"}, "Catalog", False),
237 ("gaia_dr2_20200414", {"htm7"}, "Catalog", False),
238 ],
239 expected_inputs=COMMON_INPUTS
240 | HSC_INPUTS
241 | {"jointcalPhotoCalibCatalog", "jointcalSkyWcsCatalog"},
242 expected_outputs=COMMON_OUTPUTS
243 | HSC_OUTPUTS
244 | {
245 "diaObjectTable_tract",
246 "diaSourceTable",
247 "diaSourceTable_tract",
248 "forcedSourceOnDiaObjectTable",
249 "forcedSourceOnDiaObjectTable_tract",
250 "forcedSourceTable",
251 "forcedSourceTable_tract",
252 "forced_diff",
253 "forced_diff_diaObject",
254 "forced_src_diaObject",
255 "goodSeeingCoadd",
256 "goodSeeingCoadd_nImage",
257 "goodSeeingDiff_assocDiaSrcTable",
258 "goodSeeingDiff_diaObjTable",
259 "goodSeeingDiff_diaSrc",
260 "goodSeeingDiff_diaSrcTable",
261 "goodSeeingDiff_differenceExp",
262 "goodSeeingDiff_differenceTempExp",
263 "goodSeeingDiff_fullDiaObjTable",
264 "goodSeeingDiff_matchedExp",
265 "goodSeeingDiff_templateExp",
266 "goodSeeingVisits",
267 "mergedForcedSource",
268 "mergedForcedSourceOnDiaObject",
269 "objectTable_tract_astrometryRefCat_match",
270 "sourceTable_visit_astrometryRefCat_match",
271 },
272 )
273 tester.run(butler, self)
275 def test_hsc_drp_prod(self):
276 butler = self.makeButler(writeable=True)
277 tester = PipelineStepTester(
278 os.path.join(PIPELINES_DIR, "HSC", "DRP-Prod.yaml"),
279 [
280 "#step1",
281 "#step2a",
282 "#step2b",
283 "#step2c",
284 "#step2d",
285 "#step3",
286 "#step4",
287 "#step7",
288 ],
289 [
290 ("ps1_pv3_3pi_20170110", {"htm7"}, "Catalog", False),
291 ("gaia_dr2_20200414", {"htm7"}, "Catalog", False),
292 ],
293 expected_inputs=COMMON_INPUTS | HSC_INPUTS | {"fgcmLookUpTable"},
294 expected_outputs=COMMON_OUTPUTS
295 | HSC_OUTPUTS
296 | {
297 "fgcmAtmosphereParameters6",
298 "fgcmFitParameters0",
299 "fgcmFitParameters1",
300 "fgcmFitParameters2",
301 "fgcmFitParameters3",
302 "fgcmFitParameters4",
303 "fgcmFitParameters5",
304 "fgcmFitParameters6",
305 "fgcmFlaggedStars0",
306 "fgcmFlaggedStars1",
307 "fgcmFlaggedStars2",
308 "fgcmFlaggedStars3",
309 "fgcmFlaggedStars4",
310 "fgcmFlaggedStars5",
311 "fgcmFlaggedStars6",
312 "fgcmReferenceStars",
313 "fgcmStandardStars6",
314 "fgcmStarIds",
315 "fgcmStarIndices",
316 "fgcmStarObservations",
317 "fgcmZeropoints6",
318 "transmission_atmosphere_fgcm",
319 },
320 )
321 tester.run(butler, self)
323 def test_hsc_drp_rc2(self):
324 butler = self.makeButler(writeable=True)
325 tester = PipelineStepTester(
326 os.path.join(PIPELINES_DIR, "HSC", "DRP-RC2.yaml"),
327 [f"#step{N}" for N in range(1, 8)],
328 [
329 ("ps1_pv3_3pi_20170110", {"htm7"}, "Catalog", False),
330 ("gaia_dr2_20200414", {"htm7"}, "Catalog", False),
331 ],
332 expected_inputs=COMMON_INPUTS | HSC_INPUTS | {"fgcmLookUpTable"},
333 expected_outputs=COMMON_OUTPUTS
334 | HSC_OUTPUTS
335 | {
336 "diaObjectTable_tract",
337 "diaSourceTable",
338 "diaSourceTable_tract",
339 "fgcmAtmosphereParameters4",
340 "fgcmFitParameters0",
341 "fgcmFitParameters1",
342 "fgcmFitParameters2",
343 "fgcmFitParameters3",
344 "fgcmFitParameters4",
345 "fgcmFlaggedStars0",
346 "fgcmFlaggedStars1",
347 "fgcmFlaggedStars2",
348 "fgcmFlaggedStars3",
349 "fgcmFlaggedStars4",
350 "fgcmReferenceStars",
351 "fgcmStandardStars4",
352 "fgcmStarIds",
353 "fgcmStarIndices",
354 "fgcmStarObservations",
355 "fgcmZeropoints4",
356 "forcedSourceOnDiaObjectTable",
357 "forcedSourceOnDiaObjectTable_tract",
358 "forcedSourceTable",
359 "forcedSourceTable_tract",
360 "forced_diff",
361 "forced_diff_diaObject",
362 "forced_src_diaObject",
363 "goodSeeingCoadd",
364 "goodSeeingCoadd_nImage",
365 "goodSeeingDiff_assocDiaSrcTable",
366 "goodSeeingDiff_diaObjTable",
367 "goodSeeingDiff_diaSrc",
368 "goodSeeingDiff_diaSrcTable",
369 "goodSeeingDiff_differenceExp",
370 "goodSeeingDiff_differenceTempExp",
371 "goodSeeingDiff_fullDiaObjTable",
372 "goodSeeingDiff_matchedExp",
373 "goodSeeingDiff_templateExp",
374 "goodSeeingVisits",
375 "mergedForcedSource",
376 "mergedForcedSourceOnDiaObject",
377 "transmission_atmosphere_fgcm",
378 },
379 )
380 tester.run(butler, self)
382 def test_lsstcam_imsim_drp_ci_imsim(self):
383 butler = self.makeButler(writeable=True)
384 tester = PipelineStepTester(
385 os.path.join(PIPELINES_DIR, "LSSTCam-imSim", "DRP-ci_imsim.yaml"),
386 [f"#step{N}" for N in range(1, 8)],
387 [
388 ("cal_ref_cat_2_2", {"htm7"}, "Catalog", False),
389 ],
390 expected_inputs=COMMON_INPUTS | LSSTCAM_IMSIM_INPUTS,
391 expected_outputs=COMMON_OUTPUTS | LSSTCAM_IMSIM_OUTPUTS,
392 )
393 tester.run(butler, self)
395 def test_lsstcam_imsim_drp_dp02(self):
396 butler = self.makeButler(writeable=True)
397 tester = PipelineStepTester(
398 os.path.join(PIPELINES_DIR, "LSSTCam-imSim", "DRP-DP0.2.yaml"),
399 [f"#step{N}" for N in range(1, 8)],
400 [
401 ("cal_ref_cat_2_2", {"htm7"}, "Catalog", False),
402 ],
403 expected_inputs=COMMON_INPUTS | LSSTCAM_IMSIM_INPUTS,
404 expected_outputs=COMMON_OUTPUTS | LSSTCAM_IMSIM_OUTPUTS,
405 )
406 tester.run(butler, self)
408 def test_lsstcam_imsim_drp_test_med_1(self):
409 butler = self.makeButler(writeable=True)
410 tester = PipelineStepTester(
411 os.path.join(PIPELINES_DIR, "LSSTCam-imSim", "DRP-test-med-1.yaml"),
412 [f"#step{N}" for N in range(1, 8)],
413 [
414 ("cal_ref_cat_2_2", {"htm7"}, "Catalog", False),
415 ],
416 expected_inputs=COMMON_INPUTS | LSSTCAM_IMSIM_INPUTS,
417 expected_outputs=COMMON_OUTPUTS | LSSTCAM_IMSIM_OUTPUTS,
418 )
419 tester.run(butler, self)
422if __name__ == "__main__": 422 ↛ 423line 422 didn't jump to line 423, because the condition on line 422 was never true
423 unittest.main()