lsst.pipe.tasks g89e8a135d5+28bc5f4d1f
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Calibrate an exposure: measure sources and perform astrometric and photometric calibration. More...
Public Member Functions | |
def | __init__ (self, butler=None, astromRefObjLoader=None, photoRefObjLoader=None, icSourceSchema=None, initInputs=None, **kwargs) |
Construct a CalibrateTask. More... | |
def | runDataRef (self, dataRef, exposure=None, background=None, icSourceCat=None, doUnpersist=True) |
Calibrate an exposure, optionally unpersisting inputs and persisting outputs. More... | |
def | runQuantum (self, butlerQC, inputRefs, outputRefs) |
def | run (self, exposure, exposureIdInfo=None, background=None, icSourceCat=None) |
Calibrate an exposure (science image or coadd) More... | |
def | writeOutputs (self, dataRef, exposure, background, sourceCat, astromMatches, matchMeta) |
def | getSchemaCatalogs (self) |
def | setMetadata (self, exposure, photoRes=None) |
Set task and exposure metadata. More... | |
def | copyIcSourceFields (self, icSourceCat, sourceCat) |
Match sources in icSourceCat and sourceCat and copy the specified fields. More... | |
Public Attributes | |
schemaMapper | |
calibSourceKey | |
schema | |
algMetadata | |
skySourceKey | |
outputSchema | |
Static Public Attributes | |
ConfigClass = CalibrateConfig | |
RunnerClass = pipeBase.ButlerInitializedTaskRunner | |
Calibrate an exposure: measure sources and perform astrometric and photometric calibration.
Given an exposure with a good PSF model and aperture correction map (e.g. as provided by CharacterizeImageTask), perform the following operations:
Construct a CalibrateTask.
@param[in] butler The butler is passed to the refObjLoader constructor in case it is needed. Ignored if the refObjLoader argument provides a loader directly. @param[in] astromRefObjLoader An instance of LoadReferenceObjectsTasks that supplies an external reference catalog for astrometric calibration. May be None if the desired loader can be constructed from the butler argument or all steps requiring a reference catalog are disabled. @param[in] photoRefObjLoader An instance of LoadReferenceObjectsTasks that supplies an external reference catalog for photometric calibration. May be None if the desired loader can be constructed from the butler argument or all steps requiring a reference catalog are disabled. @param[in] icSourceSchema schema for icSource catalog, or None. Schema values specified in config.icSourceFieldsToCopy will be taken from this schema. If set to None, no values will be propagated from the icSourceCatalog @param[in,out] kwargs other keyword arguments for lsst.pipe.base.CmdLineTask
If you want this task to unpersist inputs or persist outputs, then call the runDataRef
method (a wrapper around the run
method).
If you already have the inputs unpersisted and do not want to persist the output then it is more direct to call the run
method:
See CalibrateConfig
Exposure metadata
The command line task interface supports a flag --debug
to import debug.py
from your $PYTHONPATH
; see the lsstDebug documentation for more about debug.py
.
CalibrateTask has a debug dictionary containing one key:
For example, put something like:
into your debug.py
file and run calibrateTask.py
with the --debug
flag.
Some subtasks may have their own debug variables; see individual Task documentation.
Definition at line 355 of file calibrate.py.
def lsst.pipe.tasks.calibrate.CalibrateTask.__init__ | ( | self, | |
butler = None , |
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astromRefObjLoader = None , |
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photoRefObjLoader = None , |
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icSourceSchema = None , |
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initInputs = None , |
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** | kwargs | ||
) |
Construct a CalibrateTask.
@param[in] butler The butler is passed to the refObjLoader constructor in case it is needed. Ignored if the refObjLoader argument provides a loader directly. @param[in] astromRefObjLoader An instance of LoadReferenceObjectsTasks that supplies an external reference catalog for astrometric calibration. May be None if the desired loader can be constructed from the butler argument or all steps requiring a reference catalog are disabled. @param[in] photoRefObjLoader An instance of LoadReferenceObjectsTasks that supplies an external reference catalog for photometric calibration. May be None if the desired loader can be constructed from the butler argument or all steps requiring a reference catalog are disabled. @param[in] icSourceSchema schema for icSource catalog, or None. Schema values specified in config.icSourceFieldsToCopy will be taken from this schema. If set to None, no values will be propagated from the icSourceCatalog @param[in,out] kwargs other keyword arguments for lsst.pipe.base.CmdLineTask
Definition at line 452 of file calibrate.py.
def lsst.pipe.tasks.calibrate.CalibrateTask.copyIcSourceFields | ( | self, | |
icSourceCat, | |||
sourceCat | |||
) |
Match sources in icSourceCat and sourceCat and copy the specified fields.
@param[in] icSourceCat catalog from which to copy fields @param[in,out] sourceCat catalog to which to copy fields The fields copied are those specified by `config.icSourceFieldsToCopy` that actually exist in the schema. This was set up by the constructor using self.schemaMapper.
Definition at line 878 of file calibrate.py.
def lsst.pipe.tasks.calibrate.CalibrateTask.getSchemaCatalogs | ( | self | ) |
Return a dict of empty catalogs for each catalog dataset produced by this task.
Definition at line 837 of file calibrate.py.
def lsst.pipe.tasks.calibrate.CalibrateTask.run | ( | self, | |
exposure, | |||
exposureIdInfo = None , |
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background = None , |
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icSourceCat = None |
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) |
Calibrate an exposure (science image or coadd)
@param[in,out] exposure exposure to calibrate (an lsst.afw.image.ExposureF or similar); in: - MaskedImage - Psf out: - MaskedImage has background subtracted - Wcs is replaced - PhotoCalib is replaced @param[in] exposureIdInfo ID info for exposure (an lsst.obs.base.ExposureIdInfo) If not provided, returned SourceCatalog IDs will not be globally unique. @param[in,out] background background model already subtracted from exposure (an lsst.afw.math.BackgroundList). May be None if no background has been subtracted, though that is unusual for calibration. A refined background model is output. @param[in] icSourceCat A SourceCatalog from CharacterizeImageTask from which we can copy some fields. @return pipe_base Struct containing these fields: - exposure calibrate science exposure with refined WCS and PhotoCalib - background model of background subtracted from exposure (an lsst.afw.math.BackgroundList) - sourceCat catalog of measured sources - astromMatches list of source/refObj matches from the astrometry solver
Definition at line 662 of file calibrate.py.
def lsst.pipe.tasks.calibrate.CalibrateTask.runDataRef | ( | self, | |
dataRef, | |||
exposure = None , |
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background = None , |
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icSourceCat = None , |
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doUnpersist = True |
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) |
Calibrate an exposure, optionally unpersisting inputs and persisting outputs.
This is a wrapper around the run
method that unpersists inputs (if doUnpersist
true) and persists outputs (if config.doWrite
true)
[in] | dataRef | butler data reference corresponding to a science image |
[in,out] | exposure | characterized exposure (an lsst.afw.image.ExposureF or similar), or None to unpersist existing icExp and icBackground. See run method for details of what is read and written. |
[in,out] | background | initial model of background already subtracted from exposure (an lsst.afw.math.BackgroundList). May be None if no background has been subtracted, though that is unusual for calibration. A refined background model is output. Ignored if exposure is None. |
[in] | icSourceCat | catalog from which to copy the fields specified by icSourceKeys, or None; |
[in] | doUnpersist | unpersist data:
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Definition at line 568 of file calibrate.py.
def lsst.pipe.tasks.calibrate.CalibrateTask.runQuantum | ( | self, | |
butlerQC, | |||
inputRefs, | |||
outputRefs | |||
) |
Definition at line 631 of file calibrate.py.
def lsst.pipe.tasks.calibrate.CalibrateTask.setMetadata | ( | self, | |
exposure, | |||
photoRes = None |
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) |
Set task and exposure metadata.
Logs a warning and continues if needed data is missing. @param[in,out] exposure exposure whose metadata is to be set @param[in] photoRes results of running photoCal; if None then it was not run
Definition at line 845 of file calibrate.py.
def lsst.pipe.tasks.calibrate.CalibrateTask.writeOutputs | ( | self, | |
dataRef, | |||
exposure, | |||
background, | |||
sourceCat, | |||
astromMatches, | |||
matchMeta | |||
) |
Write output data to the output repository @param[in] dataRef butler data reference corresponding to a science image @param[in] exposure exposure to write @param[in] background background model for exposure @param[in] sourceCat catalog of measured sources @param[in] astromMatches list of source/refObj matches from the astrometry solver
Definition at line 813 of file calibrate.py.
lsst.pipe.tasks.calibrate.CalibrateTask.algMetadata |
Definition at line 523 of file calibrate.py.
lsst.pipe.tasks.calibrate.CalibrateTask.calibSourceKey |
Definition at line 497 of file calibrate.py.
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static |
Definition at line 448 of file calibrate.py.
lsst.pipe.tasks.calibrate.CalibrateTask.outputSchema |
Definition at line 565 of file calibrate.py.
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static |
Definition at line 450 of file calibrate.py.
lsst.pipe.tasks.calibrate.CalibrateTask.schema |
Definition at line 517 of file calibrate.py.
lsst.pipe.tasks.calibrate.CalibrateTask.schemaMapper |
Definition at line 488 of file calibrate.py.
lsst.pipe.tasks.calibrate.CalibrateTask.skySourceKey |
Definition at line 529 of file calibrate.py.