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1# This file is part of astro_metadata_translator.
2#
3# Developed for the LSST Data Management System.
4# This product includes software developed by the LSST Project
5# (http://www.lsst.org).
6# See the LICENSE file at the top-level directory of this distribution
7# for details of code ownership.
8#
9# Use of this source code is governed by a 3-clause BSD-style
10# license that can be found in the LICENSE file.
12"""Classes and support code for metadata translation"""
14__all__ = ("MetadataTranslator", "StubTranslator", "cache_translation")
16from abc import abstractmethod
17import inspect
18import importlib
19import logging
20import warnings
21import math
23import astropy.units as u
24import astropy.io.fits.card
25from astropy.coordinates import Angle
27from .properties import PROPERTIES
29log = logging.getLogger(__name__)
31# Location of the root of the corrections resource files
32CORRECTIONS_RESOURCE_ROOT = "corrections"
34"""Cache of version strings indexed by class."""
35_VERSION_CACHE = dict()
38def cache_translation(func, method=None):
39 """Decorator to cache the result of a translation method.
41 Especially useful when a translation uses many other translation
42 methods. Should be used only on ``to_x()`` methods.
44 Parameters
45 ----------
46 func : `function`
47 Translation method to cache.
48 method : `str`, optional
49 Name of the translation method to cache. Not needed if the decorator
50 is used around a normal method, but necessary when the decorator is
51 being used in a metaclass.
53 Returns
54 -------
55 wrapped : `function`
56 Method wrapped by the caching function.
57 """
58 name = func.__name__ if method is None else method
60 def func_wrapper(self):
61 if name not in self._translation_cache:
62 self._translation_cache[name] = func(self)
63 return self._translation_cache[name]
64 func_wrapper.__doc__ = func.__doc__
65 func_wrapper.__name__ = f"{name}_cached"
66 return func_wrapper
69class MetadataTranslator:
70 """Per-instrument metadata translation support
72 Parameters
73 ----------
74 header : `dict`-like
75 Representation of an instrument header that can be manipulated
76 as if it was a `dict`.
77 filename : `str`, optional
78 Name of the file whose header is being translated. For some
79 datasets with missing header information this can sometimes
80 allow for some fixups in translations.
81 """
83 # These are all deliberately empty in the base class.
84 default_search_path = None
85 """Default search path to use to locate header correction files."""
87 default_resource_package = __name__.split(".")[0]
88 """Module name to use to locate the correction resources."""
90 default_resource_root = None
91 """Default package resource path root to use to locate header correction
92 files within the ``default_resource_package`` package."""
94 _trivial_map = {}
95 """Dict of one-to-one mappings for header translation from standard
96 property to corresponding keyword."""
98 _const_map = {}
99 """Dict defining a constant for specified standard properties."""
101 translators = dict()
102 """All registered metadata translation classes."""
104 supported_instrument = None
105 """Name of instrument understood by this translation class."""
107 @classmethod
108 def defined_in_this_class(cls, name):
109 """Report if the specified class attribute is defined specifically in
110 this class.
112 Parameters
113 ----------
114 name : `str`
115 Name of the attribute to test.
117 Returns
118 -------
119 in_class : `bool`
120 `True` if there is a attribute of that name defined in this
121 specific subclass.
122 `False` if the method is not defined in this specific subclass
123 but is defined in a parent class.
124 Returns `None` if the attribute is not defined anywhere
125 in the class hierarchy (which can happen if translators have
126 typos in their mapping tables).
128 Notes
129 -----
130 Retrieves the attribute associated with the given name.
131 Then looks in all the parent classes to determine whether that
132 attribute comes from a parent class or from the current class.
133 Attributes are compared using `id()`.
134 """
135 # The attribute to compare.
136 if not hasattr(cls, name):
137 return None
138 attr_id = id(getattr(cls, name))
140 # Get all the classes in the hierarchy
141 mro = list(inspect.getmro(cls))
143 # Remove the first entry from the list since that will be the
144 # current class
145 mro.pop(0)
147 for parent in mro:
148 # Some attributes may only exist in subclasses. Skip base classes
149 # that are missing the attribute (such as object).
150 if hasattr(parent, name):
151 if id(getattr(parent, name)) == attr_id:
152 return False
153 return True
155 @staticmethod
156 def _make_const_mapping(property_key, constant):
157 """Make a translator method that returns a constant value.
159 Parameters
160 ----------
161 property_key : `str`
162 Name of the property to be calculated (for the docstring).
163 constant : `str` or `numbers.Number`
164 Value to return for this translator.
166 Returns
167 -------
168 f : `function`
169 Function returning the constant.
170 """
171 def constant_translator(self):
172 return constant
174 if property_key in PROPERTIES: 174 ↛ 177line 174 didn't jump to line 177, because the condition on line 174 was never false
175 property_doc, return_type = PROPERTIES[property_key][:2]
176 else:
177 return_type = type(constant).__name__
178 property_doc = f"Returns constant value for '{property_key}' property"
180 constant_translator.__doc__ = f"""{property_doc}
182 Returns
183 -------
184 translation : `{return_type}`
185 Translated property.
186 """
187 return constant_translator
189 @staticmethod
190 def _make_trivial_mapping(property_key, header_key, default=None, minimum=None, maximum=None,
191 unit=None, checker=None):
192 """Make a translator method returning a header value.
194 The header value can be converted to a `~astropy.units.Quantity`
195 if desired, and can also have its value validated.
197 See `MetadataTranslator.validate_value()` for details on the use
198 of default parameters.
200 Parameters
201 ----------
202 property_key : `str`
203 Name of the translator to be constructed (for the docstring).
204 header_key : `str` or `list` of `str`
205 Name of the key to look up in the header. If a `list` each
206 key will be tested in turn until one matches. This can deal with
207 header styles that evolve over time.
208 default : `numbers.Number` or `astropy.units.Quantity`, `str`, optional
209 If not `None`, default value to be used if the parameter read from
210 the header is not defined or if the header is missing.
211 minimum : `numbers.Number` or `astropy.units.Quantity`, optional
212 If not `None`, and if ``default`` is not `None`, minimum value
213 acceptable for this parameter.
214 maximum : `numbers.Number` or `astropy.units.Quantity`, optional
215 If not `None`, and if ``default`` is not `None`, maximum value
216 acceptable for this parameter.
217 unit : `astropy.units.Unit`, optional
218 If not `None`, the value read from the header will be converted
219 to a `~astropy.units.Quantity`. Only supported for numeric values.
220 checker : `function`, optional
221 Callback function to be used by the translator method in case the
222 keyword is not present. Function will be executed as if it is
223 a method of the translator class. Running without raising an
224 exception will allow the default to be used. Should usually raise
225 `KeyError`.
227 Returns
228 -------
229 t : `function`
230 Function implementing a translator with the specified
231 parameters.
232 """
233 if property_key in PROPERTIES: 233 ↛ 236line 233 didn't jump to line 236, because the condition on line 233 was never false
234 property_doc, return_type = PROPERTIES[property_key][:2]
235 else:
236 return_type = "str` or `numbers.Number"
237 property_doc = f"Map '{header_key}' header keyword to '{property_key}' property"
239 def trivial_translator(self):
240 if unit is not None:
241 q = self.quantity_from_card(header_key, unit,
242 default=default, minimum=minimum, maximum=maximum,
243 checker=checker)
244 # Convert to Angle if this quantity is an angle
245 if return_type == "astropy.coordinates.Angle":
246 q = Angle(q)
247 return q
249 keywords = header_key if isinstance(header_key, list) else [header_key]
250 for key in keywords:
251 if self.is_key_ok(key):
252 value = self._header[key]
253 if default is not None and not isinstance(value, str):
254 value = self.validate_value(value, default, minimum=minimum, maximum=maximum)
255 self._used_these_cards(key)
256 break
257 else:
258 # No keywords found, use default, checking first, or raise
259 # A None default is only allowed if a checker is provided.
260 if checker is not None:
261 try:
262 checker(self)
263 return default
264 except Exception:
265 raise KeyError(f"Could not find {keywords} in header")
266 value = default
267 elif default is not None:
268 value = default
269 else:
270 raise KeyError(f"Could not find {keywords} in header")
272 # If we know this is meant to be a string, force to a string.
273 # Sometimes headers represent items as integers which generically
274 # we want as strings (eg OBSID). Sometimes also floats are
275 # written as "NaN" strings.
276 casts = {"str": str, "float": float, "int": int}
277 if return_type in casts and not isinstance(value, casts[return_type]) and value is not None:
278 value = casts[return_type](value)
280 return value
282 # Docstring inheritance means it is confusing to specify here
283 # exactly which header value is being used.
284 trivial_translator.__doc__ = f"""{property_doc}
286 Returns
287 -------
288 translation : `{return_type}`
289 Translated value derived from the header.
290 """
291 return trivial_translator
293 @classmethod
294 def __init_subclass__(cls, **kwargs):
295 """Register all subclasses with the base class and create dynamic
296 translator methods.
298 The method provides two facilities. Firstly, every subclass
299 of `MetadataTranslator` that includes a ``name`` class property is
300 registered as a translator class that could be selected when automatic
301 header translation is attempted. Only name translator subclasses that
302 correspond to a complete instrument. Translation classes providing
303 generic translation support for multiple instrument translators should
304 not be named.
306 The second feature of this method is to convert simple translations
307 to full translator methods. Sometimes a translation is fixed (for
308 example a specific instrument name should be used) and rather than
309 provide a full ``to_property()`` translation method the mapping can be
310 defined in a class variable named ``_constMap``. Similarly, for
311 one-to-one trivial mappings from a header to a property,
312 ``_trivialMap`` can be defined. Trivial mappings are a dict mapping a
313 generic property to either a header keyword, or a tuple consisting of
314 the header keyword and a dict containing key value pairs suitable for
315 the `MetadataTranslator.quantity_from_card()` method.
316 """
317 super().__init_subclass__(**kwargs)
319 # Only register classes with declared names
320 if hasattr(cls, "name") and cls.name is not None:
321 if cls.name in MetadataTranslator.translators: 321 ↛ 322line 321 didn't jump to line 322, because the condition on line 321 was never true
322 log.warning("%s: Replacing %s translator with %s",
323 cls.name, MetadataTranslator.translators[cls.name], cls)
324 MetadataTranslator.translators[cls.name] = cls
326 # Check that we have not inherited constant/trivial mappings from
327 # parent class that we have already applied. Empty maps are always
328 # assumed okay
329 const_map = cls._const_map if cls._const_map and cls.defined_in_this_class("_const_map") else {}
330 trivial_map = cls._trivial_map \
331 if cls._trivial_map and cls.defined_in_this_class("_trivial_map") else {}
333 # Check for shadowing
334 trivials = set(trivial_map.keys())
335 constants = set(const_map.keys())
336 both = trivials & constants
337 if both: 337 ↛ 338line 337 didn't jump to line 338, because the condition on line 337 was never true
338 log.warning("%s: defined in both const_map and trivial_map: %s",
339 cls.__name__, ", ".join(both))
341 all = trivials | constants
342 for name in all:
343 if cls.defined_in_this_class(f"to_{name}"): 343 ↛ 346line 343 didn't jump to line 346, because the condition on line 343 was never true
344 # Must be one of trivial or constant. If in both then constant
345 # overrides trivial.
346 location = "by _trivial_map"
347 if name in constants:
348 location = "by _const_map"
349 log.warning("%s: %s is defined explicitly but will be replaced %s",
350 cls.__name__, name, location)
352 # Go through the trival mappings for this class and create
353 # corresponding translator methods
354 for property_key, header_key in trivial_map.items():
355 kwargs = {}
356 if type(header_key) == tuple:
357 kwargs = header_key[1]
358 header_key = header_key[0]
359 translator = cls._make_trivial_mapping(property_key, header_key, **kwargs)
360 method = f"to_{property_key}"
361 translator.__name__ = f"{method}_trivial_in_{cls.__name__}"
362 setattr(cls, method, cache_translation(translator, method=method))
363 if property_key not in PROPERTIES: 363 ↛ 364line 363 didn't jump to line 364, because the condition on line 363 was never true
364 log.warning(f"Unexpected trivial translator for '{property_key}' defined in {cls}")
366 # Go through the constant mappings for this class and create
367 # corresponding translator methods
368 for property_key, constant in const_map.items():
369 translator = cls._make_const_mapping(property_key, constant)
370 method = f"to_{property_key}"
371 translator.__name__ = f"{method}_constant_in_{cls.__name__}"
372 setattr(cls, method, translator)
373 if property_key not in PROPERTIES: 373 ↛ 374line 373 didn't jump to line 374, because the condition on line 373 was never true
374 log.warning(f"Unexpected constant translator for '{property_key}' defined in {cls}")
376 def __init__(self, header, filename=None):
377 self._header = header
378 self.filename = filename
379 self._used_cards = set()
381 # Prefix to use for warnings about failed translations
382 self._log_prefix_cache = None
384 # Cache assumes header is read-only once stored in object
385 self._translation_cache = {}
387 @classmethod
388 @abstractmethod
389 def can_translate(cls, header, filename=None):
390 """Indicate whether this translation class can translate the
391 supplied header.
393 Parameters
394 ----------
395 header : `dict`-like
396 Header to convert to standardized form.
397 filename : `str`, optional
398 Name of file being translated.
400 Returns
401 -------
402 can : `bool`
403 `True` if the header is recognized by this class. `False`
404 otherwise.
405 """
406 raise NotImplementedError()
408 @classmethod
409 def can_translate_with_options(cls, header, options, filename=None):
410 """Helper method for `can_translate` allowing options.
412 Parameters
413 ----------
414 header : `dict`-like
415 Header to convert to standardized form.
416 options : `dict`
417 Headers to try to determine whether this header can
418 be translated by this class. If a card is found it will
419 be compared with the expected value and will return that
420 comparison. Each card will be tried in turn until one is
421 found.
422 filename : `str`, optional
423 Name of file being translated.
425 Returns
426 -------
427 can : `bool`
428 `True` if the header is recognized by this class. `False`
429 otherwise.
431 Notes
432 -----
433 Intended to be used from within `can_translate` implementations
434 for specific translators. Is not intended to be called directly
435 from `determine_translator`.
436 """
437 for card, value in options.items():
438 if card in header:
439 return header[card] == value
440 return False
442 @classmethod
443 def determine_translator(cls, header, filename=None):
444 """Determine a translation class by examining the header
446 Parameters
447 ----------
448 header : `dict`-like
449 Representation of a header.
450 filename : `str`, optional
451 Name of file being translated.
453 Returns
454 -------
455 translator : `MetadataTranslator`
456 Translation class that knows how to extract metadata from
457 the supplied header.
459 Raises
460 ------
461 ValueError
462 None of the registered translation classes understood the supplied
463 header.
464 """
465 file_msg = ""
466 if filename is not None:
467 file_msg = f" from {filename}"
468 for name, trans in cls.translators.items():
469 if trans.can_translate(header, filename=filename):
470 log.debug("Using translation class %s%s", name, file_msg)
471 return trans
472 else:
473 raise ValueError(f"None of the registered translation classes {list(cls.translators.keys())}"
474 f" understood this header{file_msg}")
476 @classmethod
477 def translator_version(cls):
478 """Return the version string for this translator class.
480 Returns
481 -------
482 version : `str`
483 String identifying the version of this translator.
485 Notes
486 -----
487 Assumes that the version is available from the ``__version__``
488 variable in the parent module. If this is not the case a translator
489 should subclass this method.
490 """
491 if cls in _VERSION_CACHE:
492 return _VERSION_CACHE[cls]
494 version = "unknown"
495 module_name = cls.__module__
496 components = module_name.split(".")
497 while components:
498 # This class has already been imported so importing it
499 # should work.
500 module = importlib.import_module(".".join(components))
501 if hasattr(module, v := "__version__"):
502 version = getattr(module, v)
503 if version == "unknown":
504 # LSST software will have a fingerprint
505 if hasattr(module, v := "__fingerprint__"):
506 version = getattr(module, v)
507 break
508 else:
509 # Remove last component from module name and try again
510 components.pop()
512 _VERSION_CACHE[cls] = version
513 return version
515 @classmethod
516 def fix_header(cls, header, instrument, obsid, filename=None):
517 """Apply global fixes to a supplied header.
519 Parameters
520 ----------
521 header : `dict`
522 The header to correct. Correction is in place.
523 instrument : `str`
524 The name of the instrument.
525 obsid : `str`
526 Unique observation identifier associated with this header.
527 Will always be provided.
528 filename : `str`, optional
529 Filename associated with this header. May not be set since headers
530 can be fixed independently of any filename being known.
532 Returns
533 -------
534 modified : `bool`
535 `True` if a correction was applied.
537 Notes
538 -----
539 This method is intended to support major discrepancies in headers
540 such as:
542 * Periods of time where headers are known to be incorrect in some
543 way that can be fixed either by deriving the correct value from
544 the existing value or understanding the that correction is static
545 for the given time. This requires that the date header is
546 known.
547 * The presence of a certain value is always wrong and should be
548 corrected with a new static value regardless of date.
550 It is assumed that one off problems with headers have been applied
551 before this method is called using the per-obsid correction system.
553 Usually called from `astro_metadata_translator.fix_header`.
555 For log messages, do not assume that the filename will be present.
556 Always write log messages to fall back on using the ``obsid`` if
557 ``filename`` is `None`.
558 """
559 return False
561 @staticmethod
562 def _construct_log_prefix(obsid, filename=None):
563 """Construct a log prefix string from the obsid and filename.
565 Parameters
566 ----------
567 obsid : `str`
568 The observation identifier.
569 filename : `str`, optional
570 The filename associated with the header being translated.
571 Can be `None`.
572 """
573 if filename:
574 return f"{filename}({obsid})"
575 return obsid
577 @property
578 def _log_prefix(self):
579 """Standard prefix that can be used for log messages to report
580 useful context.
582 Will be either the filename and obsid, or just the obsid depending
583 on whether a filename is known.
585 Returns
586 -------
587 prefix : `str`
588 The prefix to use.
589 """
590 if self._log_prefix_cache is None:
591 # Protect against the unfortunate event of the obsid failing to
592 # be calculated. This should be rare but should not prevent a log
593 # message from appearing.
594 try:
595 obsid = self.to_observation_id()
596 except Exception:
597 obsid = "unknown_obsid"
598 self._log_prefix_cache = self._construct_log_prefix(obsid, self.filename)
599 return self._log_prefix_cache
601 def _used_these_cards(self, *args):
602 """Indicate that the supplied cards have been used for translation.
604 Parameters
605 ----------
606 args : sequence of `str`
607 Keywords used to process a translation.
608 """
609 self._used_cards.update(set(args))
611 def cards_used(self):
612 """Cards used during metadata extraction.
614 Returns
615 -------
616 used : `frozenset` of `str`
617 Cards used when extracting metadata.
618 """
619 return frozenset(self._used_cards)
621 @staticmethod
622 def validate_value(value, default, minimum=None, maximum=None):
623 """Validate the supplied value, returning a new value if out of range
625 Parameters
626 ----------
627 value : `float`
628 Value to be validated.
629 default : `float`
630 Default value to use if supplied value is invalid or out of range.
631 Assumed to be in the same units as the value expected in the
632 header.
633 minimum : `float`
634 Minimum possible valid value, optional. If the calculated value
635 is below this value, the default value will be used.
636 maximum : `float`
637 Maximum possible valid value, optional. If the calculated value
638 is above this value, the default value will be used.
640 Returns
641 -------
642 value : `float`
643 Either the supplied value, or a default value.
644 """
645 if value is None or math.isnan(value):
646 value = default
647 else:
648 if minimum is not None and value < minimum:
649 value = default
650 elif maximum is not None and value > maximum:
651 value = default
652 return value
654 @staticmethod
655 def is_keyword_defined(header, keyword):
656 """Return `True` if the value associated with the named keyword is
657 present in the supplied header and defined.
659 Parameters
660 ----------
661 header : `dict`-lik
662 Header to use as reference.
663 keyword : `str`
664 Keyword to check against header.
666 Returns
667 -------
668 is_defined : `bool`
669 `True` if the header is present and not-`None`. `False` otherwise.
670 """
671 if keyword is None or keyword not in header:
672 return False
674 if header[keyword] is None:
675 return False
677 # Special case Astropy undefined value
678 if isinstance(header[keyword], astropy.io.fits.card.Undefined):
679 return False
681 return True
683 def resource_root(self):
684 """Package resource to use to locate correction resources within an
685 installed package.
687 Returns
688 -------
689 resource_package : `str`
690 Package resource name. `None` if no package resource are to be
691 used.
692 resource_root : `str`
693 The name of the resource root. `None` if no package resources
694 are to be used.
695 """
696 return (self.default_resource_package, self.default_resource_root)
698 def search_paths(self):
699 """Search paths to use when searching for header fix up correction
700 files.
702 Returns
703 -------
704 paths : `list`
705 Directory paths to search. Can be an empty list if no special
706 directories are defined.
708 Notes
709 -----
710 Uses the classes ``default_search_path`` property if defined.
711 """
712 if self.default_search_path is not None:
713 return [self.default_search_path]
714 return []
716 def is_key_ok(self, keyword):
717 """Return `True` if the value associated with the named keyword is
718 present in this header and defined.
720 Parameters
721 ----------
722 keyword : `str`
723 Keyword to check against header.
725 Returns
726 -------
727 is_ok : `bool`
728 `True` if the header is present and not-`None`. `False` otherwise.
729 """
730 return self.is_keyword_defined(self._header, keyword)
732 def are_keys_ok(self, keywords):
733 """Are the supplied keys all present and defined?
735 Parameters
736 ----------
737 keywords : iterable of `str`
738 Keywords to test.
740 Returns
741 -------
742 all_ok : `bool`
743 `True` if all supplied keys are present and defined.
744 """
745 for k in keywords:
746 if not self.is_key_ok(k):
747 return False
748 return True
750 def quantity_from_card(self, keywords, unit, default=None, minimum=None, maximum=None, checker=None):
751 """Calculate a Astropy Quantity from a header card and a unit.
753 Parameters
754 ----------
755 keywords : `str` or `list` of `str`
756 Keyword to use from header. If a list each keyword will be tried
757 in turn until one matches.
758 unit : `astropy.units.UnitBase`
759 Unit of the item in the header.
760 default : `float`, optional
761 Default value to use if the header value is invalid. Assumed
762 to be in the same units as the value expected in the header. If
763 None, no default value is used.
764 minimum : `float`, optional
765 Minimum possible valid value, optional. If the calculated value
766 is below this value, the default value will be used.
767 maximum : `float`, optional
768 Maximum possible valid value, optional. If the calculated value
769 is above this value, the default value will be used.
770 checker : `function`, optional
771 Callback function to be used by the translator method in case the
772 keyword is not present. Function will be executed as if it is
773 a method of the translator class. Running without raising an
774 exception will allow the default to be used. Should usually raise
775 `KeyError`.
777 Returns
778 -------
779 q : `astropy.units.Quantity`
780 Quantity representing the header value.
782 Raises
783 ------
784 KeyError
785 The supplied header key is not present.
786 """
787 keywords = keywords if isinstance(keywords, list) else [keywords]
788 for k in keywords:
789 if self.is_key_ok(k):
790 value = self._header[k]
791 keyword = k
792 break
793 else:
794 if checker is not None:
795 try:
796 checker(self)
797 value = default
798 if value is not None:
799 value = u.Quantity(value, unit=unit)
800 return value
801 except Exception:
802 pass
803 raise KeyError(f"Could not find {keywords} in header")
804 if isinstance(value, str):
805 # Sometimes the header has the wrong type in it but this must
806 # be a number if we are creating a quantity.
807 value = float(value)
808 self._used_these_cards(keyword)
809 if default is not None:
810 value = self.validate_value(value, default, maximum=maximum, minimum=minimum)
811 return u.Quantity(value, unit=unit)
813 def _join_keyword_values(self, keywords, delim="+"):
814 """Join values of all defined keywords with the specified delimiter.
816 Parameters
817 ----------
818 keywords : iterable of `str`
819 Keywords to look for in header.
820 delim : `str`, optional
821 Character to use to join the values together.
823 Returns
824 -------
825 joined : `str`
826 String formed from all the keywords found in the header with
827 defined values joined by the delimiter. Empty string if no
828 defined keywords found.
829 """
830 values = []
831 for k in keywords:
832 if self.is_key_ok(k):
833 values.append(self._header[k])
834 self._used_these_cards(k)
836 if values:
837 joined = delim.join(str(v) for v in values)
838 else:
839 joined = ""
841 return joined
843 @cache_translation
844 def to_detector_unique_name(self):
845 """Return a unique name for the detector.
847 Base class implementation attempts to combine ``detector_name`` with
848 ``detector_group``. Group is only used if not `None`.
850 Can be over-ridden by specialist translator class.
852 Returns
853 -------
854 name : `str`
855 ``detector_group``_``detector_name`` if ``detector_group`` is
856 defined, else the ``detector_name`` is assumed to be unique.
857 If neither return a valid value an exception is raised.
859 Raises
860 ------
861 NotImplementedError
862 Raised if neither detector_name nor detector_group is defined.
863 """
864 name = self.to_detector_name()
865 group = self.to_detector_group()
867 if group is None and name is None:
868 raise NotImplementedError("Can not determine unique name from detector_group and detector_name")
870 if group is not None:
871 return f"{group}_{name}"
873 return name
875 @cache_translation
876 def to_exposure_group(self):
877 """Return the group label associated with this exposure.
879 Base class implementation returns the ``exposure_id`` in string
880 form. A subclass may do something different.
882 Returns
883 -------
884 name : `str`
885 The ``exposure_id`` converted to a string.
886 """
887 exposure_id = self.to_exposure_id()
888 if exposure_id is None:
889 return None
890 else:
891 return str(exposure_id)
893 @cache_translation
894 def to_observation_reason(self):
895 """Return the reason this observation was taken.
897 Base class implementation returns the ``science`` if the
898 ``observation_type`` is science, else ``unknown``.
899 A subclass may do something different.
901 Returns
902 -------
903 name : `str`
904 The reason for this observation.
905 """
906 obstype = self.to_observation_type()
907 if obstype == "science":
908 return "science"
909 return "unknown"
911 @cache_translation
912 def to_observing_day(self):
913 """Return the YYYYMMDD integer corresponding to the observing day.
915 Base class implementation uses the TAI date of the start of the
916 observation.
918 Returns
919 -------
920 day : `int`
921 The observing day as an integer of form YYYYMMDD. If the header
922 is broken and is unable to obtain a date of observation, ``0``
923 is returned and the assumption is made that the problem will
924 be caught elsewhere.
925 """
926 datetime_begin = self.to_datetime_begin()
927 if datetime_begin is None:
928 return 0
929 return int(datetime_begin.tai.strftime("%Y%m%d"))
931 @cache_translation
932 def to_observation_counter(self):
933 """Return an integer corresponding to how this observation relates
934 to other observations.
936 Base class implementation returns ``0`` to indicate that it is not
937 known how an observatory will define a counter. Some observatories
938 may not use the concept, others may use a counter that increases
939 for every observation taken for that instrument, and others may
940 define it to be a counter within an observing day.
942 Returns
943 -------
944 sequence : `int`
945 The observation counter. Always ``0`` for this implementation.
946 """
947 return 0
949 @classmethod
950 def determine_translatable_headers(cls, filename, primary=None):
951 """Given a file return all the headers usable for metadata translation.
953 This method can optionally be given a header from the file. This
954 header will generally be the primary header or a merge of the first
955 two headers.
957 In the base class implementation it is assumed that
958 this supplied header is the only useful header for metadata translation
959 and it will be returned unchanged if given. This can avoid
960 unnecesarily re-opening the file and re-reading the header when the
961 content is already known.
963 If no header is supplied, a header will be read from the supplied
964 file using `read_basic_metadata_from_file`, allowing it to merge
965 the primary and secondary header of a multi-extension FITS file.
966 Subclasses can read the header from the data file using whatever
967 technique is best for that instrument.
969 Subclasses can return multiple headers and ignore the externally
970 supplied header. They can also merge it with another header and return
971 a new derived header if that is required by the particular data file.
972 There is no requirement for the supplied header to be used.
974 Parameters
975 ----------
976 filename : `str`
977 Path to a file in a format understood by this translator.
978 primary : `dict`-like, optional
979 The primary header obtained by the caller. This is sometimes
980 already known, for example if a system is trying to bootstrap
981 without already knowing what data is in the file. For many
982 instruments where the primary header is the only relevant
983 header, the primary header will be returned with no further
984 action.
986 Yields
987 ------
988 headers : iterator of `dict`-like
989 A header usable for metadata translation. For this base
990 implementation it will be either the supplied primary header
991 or a header read from the file. This implementation will only
992 ever yield a single header.
994 Notes
995 -----
996 Each translator class can have code specifically tailored to its
997 own file format. It is important not to call this method with
998 an incorrect translator class. The normal paradigm is for the
999 caller to have read the first header and then called
1000 `determine_translator()` on the result to work out which translator
1001 class to then call to obtain the real headers to be used for
1002 translation.
1003 """
1004 if primary is not None:
1005 yield primary
1006 else:
1007 # Prevent circular import by deferring
1008 from .file_helpers import read_basic_metadata_from_file
1010 # Merge primary and secondary header if they exist.
1011 yield read_basic_metadata_from_file(filename, -1)
1014def _make_abstract_translator_method(property, doc, return_typedoc, return_type):
1015 """Create a an abstract translation method for this property.
1017 Parameters
1018 ----------
1019 property : `str`
1020 Name of the translator for property to be created.
1021 doc : `str`
1022 Description of the property.
1023 return_typedoc : `str`
1024 Type string of this property (used in the doc string).
1025 return_type : `class`
1026 Type of this property.
1028 Returns
1029 -------
1030 m : `function`
1031 Translator method for this property.
1032 """
1033 def to_property(self):
1034 raise NotImplementedError(f"Translator for '{property}' undefined.")
1036 to_property.__doc__ = f"""Return value of {property} from headers.
1038 {doc}
1040 Returns
1041 -------
1042 {property} : `{return_typedoc}`
1043 The translated property.
1044 """
1045 return to_property
1048# Make abstract methods for all the translators methods.
1049# Unfortunately registering them as abstractmethods does not work
1050# as these assignments come after the class has been created.
1051# Assigning to __abstractmethods__ directly does work but interacts
1052# poorly with the metaclass automatically generating methods from
1053# _trivialMap and _constMap.
1055# Allow for concrete translator methods to exist in the base class
1056# These translator methods can be defined in terms of other properties
1057CONCRETE = set()
1059for name, description in PROPERTIES.items():
1060 method = f"to_{name}"
1061 if not MetadataTranslator.defined_in_this_class(method):
1062 setattr(MetadataTranslator, f"to_{name}",
1063 abstractmethod(_make_abstract_translator_method(name, *description[:3])))
1064 else:
1065 CONCRETE.add(method)
1068class StubTranslator(MetadataTranslator):
1069 """Translator where all the translations are stubbed out and issue
1070 warnings.
1072 This translator can be used as a base class whilst developing a new
1073 translator. It allows testing to proceed without being required to fully
1074 define all translation methods. Once complete the class should be
1075 removed from the inheritance tree.
1077 """
1078 pass
1081def _make_forwarded_stub_translator_method(cls, property, doc, return_typedoc, return_type):
1082 """Create a stub translation method for this property that calls the
1083 base method and catches `NotImplementedError`.
1085 Parameters
1086 ----------
1087 cls : `class`
1088 Class to use when referencing `super()`. This would usually be
1089 `StubTranslator`.
1090 property : `str`
1091 Name of the translator for property to be created.
1092 doc : `str`
1093 Description of the property.
1094 return_typedoc : `str`
1095 Type string of this property (used in the doc string).
1096 return_type : `class`
1097 Type of this property.
1099 Returns
1100 -------
1101 m : `function`
1102 Stub translator method for this property.
1103 """
1104 method = f"to_{property}"
1106 def to_stub(self):
1107 parent = getattr(super(cls, self), method, None)
1108 try:
1109 if parent is not None:
1110 return parent()
1111 except NotImplementedError:
1112 pass
1114 warnings.warn(f"Please implement translator for property '{property}' for translator {self}",
1115 stacklevel=3)
1116 return None
1118 to_stub.__doc__ = f"""Unimplemented forwarding translator for {property}.
1120 {doc}
1122 Calls the base class translation method and if that fails with
1123 `NotImplementedError` issues a warning reminding the implementer to
1124 override this method.
1126 Returns
1127 -------
1128 {property} : `None` or `{return_typedoc}`
1129 Always returns `None`.
1130 """
1131 return to_stub
1134# Create stub translation methods for each property. These stubs warn
1135# rather than fail and should be overridden by translators.
1136for name, description in PROPERTIES.items():
1137 setattr(StubTranslator, f"to_{name}", _make_forwarded_stub_translator_method(StubTranslator,
1138 name, *description[:3]))