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1from lsst.meas.algorithms import Defects 

2from lsst.meas.algorithms.simple_curve import Curve 

3from lsst.ip.isr import Linearizer 

4 

5import os 

6import glob 

7import dateutil.parser 

8 

9 

10def read_one_chip(root, chip_name, chip_id): 

11 """Read data for a particular sensor from the standard format at a particular root. 

12 

13 Parameters 

14 ---------- 

15 root : `str` 

16 Path to the top level of the data tree. This is expected to hold directories 

17 named after the sensor names. They are expected to be lower case. 

18 chip_name : `str` 

19 The name of the sensor for which to read data. 

20 chip_id : `int` 

21 The identifier for the sensor in question. 

22 

23 Returns 

24 ------- 

25 `dict` 

26 A dictionary of objects constructed from the appropriate factory class. 

27 The key is the validity start time as a `datetime` object. 

28 """ 

29 factory_map = {'qe_curve': Curve, 'defects': Defects, 'linearizer': Linearizer} 

30 files = [] 

31 extensions = (".ecsv", ".yaml") 

32 for ext in extensions: 

33 files.extend(glob.glob(os.path.join(root, chip_name, f"*{ext}"))) 

34 parts = os.path.split(root) 

35 instrument = os.path.split(parts[0])[1] # convention is that these reside at <instrument>/<data_name> 

36 data_name = parts[1] 

37 if data_name not in factory_map: 37 ↛ 38line 37 didn't jump to line 38, because the condition on line 37 was never true

38 raise ValueError(f"Unknown calibration data type, '{data_name}' found. " 

39 f"Only understand {','.join(k for k in factory_map)}") 

40 factory = factory_map[data_name] 

41 data_dict = {} 

42 for f in files: 

43 date_str = os.path.splitext(os.path.basename(f))[0] 

44 valid_start = dateutil.parser.parse(date_str) 

45 data_dict[valid_start] = factory.readText(f) 

46 check_metadata(data_dict[valid_start], valid_start, instrument, chip_id, f, data_name) 

47 return data_dict, data_name 

48 

49 

50def check_metadata(obj, valid_start, instrument, chip_id, filepath, data_name): 

51 """Check that the metadata is complete and self consistent 

52 

53 Parameters 

54 ---------- 

55 obj : object of same type as the factory 

56 Object to retrieve metadata from in order to compare with 

57 metadata inferred from the path. 

58 valid_start : `datetime` 

59 Start of the validity range for data 

60 instrument : `str` 

61 Name of the instrument in question 

62 chip_id : `int` 

63 Identifier of the sensor in question 

64 filepath : `str` 

65 Path of the file read to construct the data 

66 data_name : `str` 

67 Name of the type of data being read 

68 

69 Returns 

70 ------- 

71 None 

72 

73 Raises 

74 ------ 

75 ValueError 

76 If the metadata from the path and the metadata encoded 

77 in the path do not match for any reason. 

78 """ 

79 md = obj.getMetadata() 

80 finst = md['INSTRUME'] 

81 fchip_id = md['DETECTOR'] 

82 fdata_name = md['OBSTYPE'] 

83 if not ((finst.lower(), int(fchip_id), fdata_name) 83 ↛ 85line 83 didn't jump to line 85, because the condition on line 83 was never true

84 == (instrument.lower(), chip_id, data_name)): 

85 raise ValueError(f"Path and file metadata do not agree:\n" 

86 f"Path metadata: {instrument} {chip_id} {data_name}\n" 

87 f"File metadata: {finst} {fchip_id} {fdata_name}\n" 

88 f"File read from : %s\n"%(filepath) 

89 ) 

90 

91 

92def read_all(root, camera): 

93 """Read all data from the standard format at a particular root. 

94 

95 Parameters 

96 ---------- 

97 root : `str` 

98 Path to the top level of the data tree. This is expected to hold directories 

99 named after the sensor names. They are expected to be lower case. 

100 camera : `lsst.afw.cameraGeom.Camera` 

101 The camera that goes with the data being read. 

102 

103 Returns 

104 ------- 

105 dict 

106 A dictionary of dictionaries of objects constructed with the appropriate factory class. 

107 The first key is the sensor name lowered, and the second is the validity 

108 start time as a `datetime` object. 

109 

110 Notes 

111 ----- 

112 Each leaf object in the constructed dictionary has metadata associated with it. 

113 The detector ID may be retrieved from the DETECTOR entry of that metadata. 

114 """ 

115 root = os.path.normpath(root) 

116 dirs = os.listdir(root) # assumes all directories contain data 

117 dirs = [d for d in dirs if os.path.isdir(os.path.join(root, d))] 

118 data_by_chip = {} 

119 name_map = {det.getName().lower(): det.getName() for 

120 det in camera} # we assume the directories have been lowered 

121 

122 if not dirs: 122 ↛ 123line 122 didn't jump to line 123, because the condition on line 122 was never true

123 raise RuntimeError(f"No data found on path {root}") 

124 

125 calib_types = set() 

126 for d in dirs: 

127 chip_name = os.path.basename(d) 

128 chip_id = camera[name_map[chip_name]].getId() 

129 data_by_chip[chip_name], calib_type = read_one_chip(root, chip_name, chip_id) 

130 calib_types.add(calib_type) 

131 if len(calib_types) != 1: # set.add(None) has length 1 so None is OK here. 131 ↛ 132line 131 didn't jump to line 132, because the condition on line 131 was never true

132 raise ValueError(f'Error mixing calib types: {calib_types}') 

133 

134 no_data = all([v == {} for v in data_by_chip.values()]) 

135 if no_data: 135 ↛ 136line 135 didn't jump to line 136, because the condition on line 135 was never true

136 raise RuntimeError(f'No data to ingest') 

137 

138 return data_by_chip, calib_type