Coverage for .test/JointcalTestCFHTMinimal/test_jointcalTask_2_visits

assert type(config)==lsst.jointcal.jointcal.JointcalConfig, 'config is of type %s.%s instead of lsst.jointcal.jointcal.JointcalConfig' % (type(config).__module__, type(config).__name__)

import lsst.meas.algorithms.objectSizeStarSelector

import lsst.meas.algorithms.loadIndexedReferenceObjects

import lsst.meas.algorithms.matcherSourceSelector

import lsst.meas.algorithms.sourceSelector

import lsst.meas.algorithms.astrometrySourceSelector

import lsst.pipe.tasks.colorterms

import lsst.meas.algorithms.flaggedSourceSelector

# Fit astrometry and write the fitted result.

config.doAstrometry=False

# Fit photometry and write the fitted result.

config.doPhotometry=True

# Type of coadd, typically deep or goodSeeing

config.coaddName='deep'

# Systematic term to apply to the measured position error (pixels)

config.positionErrorPedestal=0.02

# Systematic term to apply to the measured error on flux or magnitude as a fraction of source flux or magnitude delta (e.g. 0.05 is 5% of flux or +50 millimag).

config.photometryErrorPedestal=0.0

# Matching radius between fitted and reference stars (arcseconds)

config.matchCut=3.0

# Minimum number of associated measured stars for a fitted star to be included in the fit

config.minMeasurements=2

# Minimum number of measuredStars per ccdImage before printing warnings

config.minMeasuredStarsPerCcd=100

# Minimum number of measuredStars per ccdImage before printing warnings

config.minRefStarsPerCcd=30

# Allow a line search during minimization, if it is reasonable for the model (models with a significant non-linear component, e.g. constrainedPhotometry).

config.allowLineSearch=False

# Polynomial order for fitting the simple astrometry model.

config.astrometrySimpleOrder=3

# Order of the per-chip transform for the constrained astrometry model.

config.astrometryChipOrder=1

# Order of the per-visit transform for the constrained astrometry model.

config.astrometryVisitOrder=5

# Use the input calexp WCSs to initialize a SimpleAstrometryModel.

config.useInputWcs=True

# Type of model to fit to astrometry

config.astrometryModel='constrained'

# Type of model to fit to photometry

config.photometryModel='simpleFlux'

# Apply photometric color terms to reference stars?Requires that colorterms be set to a ColortermLibrary

config.applyColorTerms=False

config.colorterms.data={}

# Order of the per-visit polynomial transform for the constrained photometry model.

config.photometryVisitOrder=7

# Do the rank update step during minimization. Skipping this can help deal with models that are too non-linear.

config.photometryDoRankUpdate=True

# Do the rank update step during minimization (should not change the astrometry fit). Skipping this can help deal with models that are too non-linear.

config.astrometryDoRankUpdate=True

# How many sigma to reject outliers at during minimization.

config.outlierRejectSigma=5.0

# Maximum number of minimize iterations to take when fitting photometry.

config.maxPhotometrySteps=20

# Maximum number of minimize iterations to take when fitting photometry.

config.maxAstrometrySteps=20

# Padding to add to 4 all edges of the bounding box (pixels)

config.astrometryRefObjLoader.pixelMargin=300

# Default reference catalog filter to use if filter not specified in exposure; if blank then filter must be specified in exposure

config.astrometryRefObjLoader.defaultFilter=''

# Mapping of camera filter name: reference catalog filter name; each reference filter must exist

config.astrometryRefObjLoader.filterMap={}

# Require that the fields needed to correct proper motion (epoch, pm_ra and pm_dec) are present?

config.astrometryRefObjLoader.requireProperMotion=False

# Name of the ingested reference dataset

config.astrometryRefObjLoader.ref_dataset_name='sdss-dr9-fink-v5b'

# Padding to add to 4 all edges of the bounding box (pixels)

config.photometryRefObjLoader.pixelMargin=300

# Default reference catalog filter to use if filter not specified in exposure; if blank then filter must be specified in exposure

config.photometryRefObjLoader.defaultFilter=''

# Mapping of camera filter name: reference catalog filter name; each reference filter must exist

config.photometryRefObjLoader.filterMap={}

# Require that the fields needed to correct proper motion (epoch, pm_ra and pm_dec) are present?

config.photometryRefObjLoader.requireProperMotion=False

# Name of the ingested reference dataset

config.photometryRefObjLoader.ref_dataset_name='sdss-dr9-fink-v5b'

# Apply flux limit?

config.sourceSelector['science'].doFluxLimit=False

# Apply flag limitation?

config.sourceSelector['science'].doFlags=False

# Apply unresolved limitation?

config.sourceSelector['science'].doUnresolved=False

# Apply signal-to-noise limit?

config.sourceSelector['science'].doSignalToNoise=False

# Apply isolated limitation?

config.sourceSelector['science'].doIsolated=False

# Select objects with value greater than this

config.sourceSelector['science'].fluxLimit.minimum=None

# Select objects with value less than this

config.sourceSelector['science'].fluxLimit.maximum=None

# Name of the source flux field to use.

config.sourceSelector['science'].fluxLimit.fluxField='slot_CalibFlux_instFlux'

# List of source flag fields that must be set for a source to be used.

config.sourceSelector['science'].flags.good=[]

# List of source flag fields that must NOT be set for a source to be used.

config.sourceSelector['science'].flags.bad=['base_PixelFlags_flag_edge', 'base_PixelFlags_flag_saturated', 'base_PsfFlux_flags']

# Select objects with value greater than this

config.sourceSelector['science'].unresolved.minimum=None

# Select objects with value less than this

config.sourceSelector['science'].unresolved.maximum=0.5

# Name of column for star/galaxy separation

config.sourceSelector['science'].unresolved.name='base_ClassificationExtendedness_value'

# Select objects with value greater than this

config.sourceSelector['science'].signalToNoise.minimum=None

# Select objects with value less than this

config.sourceSelector['science'].signalToNoise.maximum=None

# Name of the source flux field to use.

config.sourceSelector['science'].signalToNoise.fluxField='base_PsfFlux_instFlux'

# Name of the source flux error field to use.

config.sourceSelector['science'].signalToNoise.errField='base_PsfFlux_instFluxErr'

# Name of column for parent

config.sourceSelector['science'].isolated.parentName='parent'

# Name of column for nChild

config.sourceSelector['science'].isolated.nChildName='deblend_nChild'

# Apply magnitude limit?

config.sourceSelector['references'].doMagLimit=False

# Apply flag limitation?

config.sourceSelector['references'].doFlags=False

# Apply unresolved limitation?

config.sourceSelector['references'].doUnresolved=False

# Apply signal-to-noise limit?

config.sourceSelector['references'].doSignalToNoise=False

# Apply magnitude error limit?

config.sourceSelector['references'].doMagError=False

# Select objects with value greater than this

config.sourceSelector['references'].magLimit.minimum=None

# Select objects with value less than this

config.sourceSelector['references'].magLimit.maximum=None

# Name of the source flux field to use.

config.sourceSelector['references'].magLimit.fluxField='flux'

# List of source flag fields that must be set for a source to be used.

config.sourceSelector['references'].flags.good=[]

# List of source flag fields that must NOT be set for a source to be used.

config.sourceSelector['references'].flags.bad=[]

# Select objects with value greater than this

config.sourceSelector['references'].unresolved.minimum=None

# Select objects with value less than this

config.sourceSelector['references'].unresolved.maximum=0.5

# Name of column for star/galaxy separation

config.sourceSelector['references'].unresolved.name='base_ClassificationExtendedness_value'

# Select objects with value greater than this

config.sourceSelector['references'].signalToNoise.minimum=None

# Select objects with value less than this

config.sourceSelector['references'].signalToNoise.maximum=None

# Name of the source flux field to use.

config.sourceSelector['references'].signalToNoise.fluxField='flux'

# Name of the source flux error field to use.

config.sourceSelector['references'].signalToNoise.errField='flux_err'

# Select objects with value greater than this

config.sourceSelector['references'].magError.minimum=None

# Select objects with value less than this

config.sourceSelector['references'].magError.maximum=None

# Name of the source flux error field to use.

config.sourceSelector['references'].magError.magErrField='mag_err'

config.sourceSelector['references'].colorLimits={}

# Apply flux limit to Psf Candidate selection?

config.sourceSelector['objectSize'].doFluxLimit=True

# specify the minimum psfFlux for good Psf Candidates

config.sourceSelector['objectSize'].fluxMin=12500.0

# specify the maximum psfFlux for good Psf Candidates (ignored if == 0)

config.sourceSelector['objectSize'].fluxMax=0.0

# Apply signal-to-noise (i.e. flux/fluxErr) limit to Psf Candidate selection?

config.sourceSelector['objectSize'].doSignalToNoiseLimit=False

# specify the minimum signal-to-noise for good Psf Candidates

config.sourceSelector['objectSize'].signalToNoiseMin=20.0

# specify the maximum signal-to-noise for good Psf Candidates (ignored if == 0)

config.sourceSelector['objectSize'].signalToNoiseMax=0.0

# minimum width to include in histogram

config.sourceSelector['objectSize'].widthMin=0.0

# maximum width to include in histogram

config.sourceSelector['objectSize'].widthMax=10.0

# Name of field in Source to use for flux measurement

config.sourceSelector['objectSize'].sourceFluxField='base_GaussianFlux_instFlux'

# Standard deviation of width allowed to be interpreted as good stars

config.sourceSelector['objectSize'].widthStdAllowed=0.15

# Keep objects within this many sigma of cluster 0's median

config.sourceSelector['objectSize'].nSigmaClip=2.0

# List of flags which cause a source to be rejected as bad

config.sourceSelector['objectSize'].badFlags=['base_PixelFlags_flag_edge', 'base_PixelFlags_flag_interpolatedCenter', 'base_PixelFlags_flag_saturatedCenter', 'base_PixelFlags_flag_crCenter', 'base_PixelFlags_flag_bad', 'base_PixelFlags_flag_interpolated']

# Name of a flag field that is True for Sources that should be used.

config.sourceSelector['flagged'].field='calib_psf_used'

# List of flags which cause a source to be rejected as bad

config.sourceSelector['astrometry'].badFlags=['base_PixelFlags_flag_edge', 'base_PixelFlags_flag_interpolatedCenter', 'base_PixelFlags_flag_saturatedCenter', 'base_PixelFlags_flag_crCenter', 'base_PixelFlags_flag_bad', 'slot_Shape_flag']

# Type of source flux; typically one of Ap or Psf

config.sourceSelector['astrometry'].sourceFluxType='Calib'

# Minimum allowed signal-to-noise ratio for sources used for matching (in the flux specified by sourceFluxType); <= 0 for no limit

config.sourceSelector['astrometry'].minSnr=10.0

# Type of source flux; typically one of Ap or Psf

config.sourceSelector['matcher'].sourceFluxType='Ap'

# Minimum allowed signal-to-noise ratio for sources used for matching (in the flux specified by sourceFluxType); <= 0 for no limit

config.sourceSelector['matcher'].minSnr=40.0

# Exclude objects that have saturated, interpolated, or edge pixels using PixelFlags. For matchOptimisticB set this to False to recover previous matcher selector behavior.

config.sourceSelector['matcher'].excludePixelFlags=True

config.sourceSelector.name='astrometry'

# Apply magnitude limit?

config.astrometryReferenceSelector.doMagLimit=False

# Apply flag limitation?

config.astrometryReferenceSelector.doFlags=False

# Apply unresolved limitation?

config.astrometryReferenceSelector.doUnresolved=False

# Apply signal-to-noise limit?

config.astrometryReferenceSelector.doSignalToNoise=False

# Apply magnitude error limit?

config.astrometryReferenceSelector.doMagError=False

# Select objects with value greater than this

config.astrometryReferenceSelector.magLimit.minimum=None

# Select objects with value less than this

config.astrometryReferenceSelector.magLimit.maximum=None

# Name of the source flux field to use.

config.astrometryReferenceSelector.magLimit.fluxField='flux'

# List of source flag fields that must be set for a source to be used.

config.astrometryReferenceSelector.flags.good=[]

# List of source flag fields that must NOT be set for a source to be used.

config.astrometryReferenceSelector.flags.bad=[]

# Select objects with value greater than this

config.astrometryReferenceSelector.unresolved.minimum=None

# Select objects with value less than this

config.astrometryReferenceSelector.unresolved.maximum=0.5

# Name of column for star/galaxy separation

config.astrometryReferenceSelector.unresolved.name='base_ClassificationExtendedness_value'

# Select objects with value greater than this

config.astrometryReferenceSelector.signalToNoise.minimum=None

# Select objects with value less than this

config.astrometryReferenceSelector.signalToNoise.maximum=None

# Name of the source flux field to use.

config.astrometryReferenceSelector.signalToNoise.fluxField='flux'

# Name of the source flux error field to use.

config.astrometryReferenceSelector.signalToNoise.errField='flux_err'

# Select objects with value greater than this

config.astrometryReferenceSelector.magError.minimum=None

# Select objects with value less than this

config.astrometryReferenceSelector.magError.maximum=None

# Name of the source flux error field to use.

config.astrometryReferenceSelector.magError.magErrField='mag_err'

config.astrometryReferenceSelector.colorLimits={}

# Apply magnitude limit?

config.photometryReferenceSelector.doMagLimit=False

# Apply flag limitation?

config.photometryReferenceSelector.doFlags=False

# Apply unresolved limitation?

config.photometryReferenceSelector.doUnresolved=False

# Apply signal-to-noise limit?

config.photometryReferenceSelector.doSignalToNoise=False

# Apply magnitude error limit?

config.photometryReferenceSelector.doMagError=False

# Select objects with value greater than this

config.photometryReferenceSelector.magLimit.minimum=None

# Select objects with value less than this

config.photometryReferenceSelector.magLimit.maximum=None

# Name of the source flux field to use.

config.photometryReferenceSelector.magLimit.fluxField='flux'

# List of source flag fields that must be set for a source to be used.

config.photometryReferenceSelector.flags.good=[]

# List of source flag fields that must NOT be set for a source to be used.

config.photometryReferenceSelector.flags.bad=[]

# Select objects with value greater than this

config.photometryReferenceSelector.unresolved.minimum=None

# Select objects with value less than this

config.photometryReferenceSelector.unresolved.maximum=0.5

# Name of column for star/galaxy separation

config.photometryReferenceSelector.unresolved.name='base_ClassificationExtendedness_value'

# Select objects with value greater than this

config.photometryReferenceSelector.signalToNoise.minimum=None

# Select objects with value less than this

config.photometryReferenceSelector.signalToNoise.maximum=None

# Name of the source flux field to use.

config.photometryReferenceSelector.signalToNoise.fluxField='flux'

# Name of the source flux error field to use.

config.photometryReferenceSelector.signalToNoise.errField='flux_err'

# Select objects with value greater than this

config.photometryReferenceSelector.magError.minimum=None

# Select objects with value less than this

config.photometryReferenceSelector.magError.maximum=None

# Name of the source flux error field to use.

config.photometryReferenceSelector.magError.magErrField='mag_err'

config.photometryReferenceSelector.colorLimits={}

# Write the pre/post-initialization Hessian and gradient to text files, for debugging.The output files will be of the form 'astrometry_preinit-mat.txt', in the current directory.Note that these files are the dense versions of the matrix, and so may be very large.

config.writeInitMatrix=True

# Write .csv files containing the contributions to chi2 for the initialization and final fit.

config.writeChi2FilesInitialFinal=False

# Write .csv files containing the contributions to chi2 for the outer fit loop.

config.writeChi2FilesOuterLoop=False

# Source flux field to use in source selection and to get fluxes from the catalog.

config.sourceFluxType='Calib'

Coverage for .test/JointcalTestCFHTMinimal/test_jointcalTask_2_visits_photometry/config/jointcal.py : 100%

149 statements 149 run 0 missing 0 excluded 0 partial