Coverage for tests/test_pipelines.py: 42%

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1# This file is part of drp_pipe. 

2# 

3# Developed for the LSST Data Management System. 

4# This product includes software developed by the LSST Project 

5# (http://www.lsst.org). 

6# See the COPYRIGHT file at the top-level directory of this distribution 

7# for details of code ownership. 

8# 

9# This program is free software: you can redistribute it and/or modify 

10# it under the terms of the GNU General Public License as published by 

11# the Free Software Foundation, either version 3 of the License, or 

12# (at your option) any later version. 

13# 

14# This program is distributed in the hope that it will be useful, 

15# but WITHOUT ANY WARRANTY; without even the implied warranty of 

16# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 

17# GNU General Public License for more details. 

18# 

19# You should have received a copy of the GNU General Public License 

20# along with this program. If not, see <http://www.gnu.org/licenses/>. 

21 

22"""Unit tests for tracking edits to drp_pipe pipelines. 

23""" 

24 

25import os 

26import tempfile 

27import unittest 

28from typing import Any 

29 

30from lsst.daf.butler import Butler, ButlerConfig, Registry, RegistryConfig 

31from lsst.daf.butler.tests import DatastoreMock 

32from lsst.daf.butler.tests.utils import makeTestTempDir, removeTestTempDir 

33from lsst.pipe.base.tests.pipelineStepTester import PipelineStepTester 

34 

35PIPELINES_DIR = os.path.join(os.path.dirname(__file__), "..", "pipelines") 

36TEST_DIR = os.path.abspath(os.path.dirname(__file__)) 

37 

38# mostly common inputs 

39COMMON_INPUTS = { 

40 "bfKernel", 

41 "bias", 

42 "camera", 

43 "crosstalk", 

44 "dark", 

45 "flat", 

46 "fringe", 

47 "isrOverscanCorrected", 

48 "raw", 

49 "skyMap", 

50} 

51 

52# HSC common inputs, in addition to COMMON_INPUTS 

53HSC_INPUTS = { 

54 "brightObjectMask", 

55 "brighterFatterKernel", 

56 "defects", 

57 "gaia_dr2_20200414", 

58 "linearizer", 

59 "ps1_pv3_3pi_20170110", 

60 "sky", 

61 "transmission_atmosphere", 

62 "transmission_filter", 

63 "transmission_optics", 

64 "transmission_sensor", 

65 "yBackground", 

66} 

67 

68# LSSTCam-imSim common inputs, in addition to COMMON_INPUTS 

69LSSTCAM_IMSIM_INPUTS = { 

70 "bfk", 

71 "cal_ref_cat_2_2", 

72 "truth_summary", 

73} 

74 

75# a selection of mostly common outputs 

76COMMON_OUTPUTS = { 

77 "calexp", 

78 "calexpBackground", 

79 "ccdVisitTable", 

80 "deepCoadd", 

81 "deepCoadd_calexp", 

82 "deepCoadd_calexp_background", 

83 "deepCoadd_det", 

84 "deepCoadd_directWarp", 

85 "deepCoadd_forced_src", 

86 "deepCoadd_inputMap", 

87 "deepCoadd_meas", 

88 "deepCoadd_measMatch", 

89 "deepCoadd_measMatchFull", 

90 "deepCoadd_mergeDet", 

91 "deepCoadd_nImage", 

92 "deepCoadd_obj", 

93 "deepCoadd_psfMatchedWarp", 

94 "deepCoadd_ref", 

95 "deepCoadd_scarletModelData", 

96 "finalized_src_table", 

97 "finalVisitSummary", 

98 "icExp", 

99 "icExpBackground", 

100 "icSrc", 

101 "isolated_star_cat", 

102 "isolated_star_sources", 

103 "objectTable", 

104 "objectTable_tract", 

105 "postISRCCD", 

106 "source", 

107 "sourceTable", 

108 "sourceTable_visit", 

109 "src", 

110 "srcMatch", 

111 "visitSummary", 

112 "visitTable", 

113} 

114 

115# HSC common outputs, in addition to COMMON_OUTPUTS 

116HSC_OUTPUTS = { 

117 "calexp_skyCorr_visit_mosaic", 

118 "calexpBackground_skyCorr_visit_mosaic", 

119 "forced_src", 

120 "preSource", 

121 "preSourceTable", 

122 "preSourceTable_visit", 

123 "skyCorr", 

124 "srcMatchFull", 

125} 

126 

127# LSSTCam-imSim common outputs, in addition to COMMON_OUTPUTS 

128LSSTCAM_IMSIM_OUTPUTS = { 

129 "diaObjectTable_tract", 

130 "diaSourceTable", 

131 "diaSourceTable_tract", 

132 "forcedSourceOnDiaObjectTable", 

133 "forcedSourceOnDiaObjectTable_tract", 

134 "forcedSourceTable", 

135 "forcedSourceTable_tract", 

136 "forced_diff", 

137 "forced_diff_diaObject", 

138 "forced_src", 

139 "forced_src_diaObject", 

140 "goodSeeingCoadd", 

141 "goodSeeingCoadd_nImage", 

142 "goodSeeingDiff_assocDiaSrcTable", 

143 "goodSeeingDiff_diaObjTable", 

144 "goodSeeingDiff_diaSrc", 

145 "goodSeeingDiff_diaSrcTable", 

146 "goodSeeingDiff_differenceExp", 

147 "goodSeeingDiff_differenceTempExp", 

148 "goodSeeingDiff_fullDiaObjTable", 

149 "goodSeeingDiff_matchedExp", 

150 "goodSeeingDiff_templateExp", 

151 "goodSeeingVisits", 

152 "mergedForcedSource", 

153 "mergedForcedSourceOnDiaObject", 

154} 

155 

156 

157class PipelineTestCase(unittest.TestCase): 

158 def setUp(self): 

159 self.root = makeTestTempDir(TEST_DIR) 

160 self.maxDiff = None 

161 

162 def tearDown(self): 

163 removeTestTempDir(self.root) 

164 

165 def makeButler(self, **kwargs: Any) -> Butler: 

166 """Return new Butler instance on each call.""" 

167 config = ButlerConfig() 

168 

169 # make separate temporary directory for registry of this instance 

170 tmpdir = tempfile.mkdtemp(dir=self.root) 

171 config["registry", "db"] = f"sqlite:///{tmpdir}/gen3.sqlite3" 

172 config["root"] = self.root 

173 

174 # have to make a registry first 

175 registryConfig = RegistryConfig(config.get("registry")) 

176 Registry.createFromConfig(registryConfig) 

177 

178 butler = Butler(config, **kwargs) 

179 DatastoreMock.apply(butler) 

180 return butler 

181 

182 def test_decam_drp_merian(self): 

183 butler = self.makeButler(writeable=True) 

184 tester0 = PipelineStepTester( 

185 os.path.join(PIPELINES_DIR, "DECam", "DRP-Merian.yaml"), 

186 ["#step0"], 

187 [ 

188 ("ps1_pv3_3pi_20170110", {"htm7"}, "Catalog", False), 

189 ("gaia_dr2_20200414", {"htm7"}, "Catalog", False), 

190 ], 

191 expected_inputs={ 

192 "camera", 

193 "raw", 

194 }, 

195 expected_outputs={"overscanRaw"}, 

196 ) 

197 tester0.run(butler, self) 

198 tester = PipelineStepTester( 

199 os.path.join(PIPELINES_DIR, "DECam", "DRP-Merian.yaml"), 

200 [ 

201 "#step1", 

202 "#step2a", 

203 "#step2b", 

204 "#step2d", 

205 "#step2e", 

206 "#step3", 

207 ], 

208 [ 

209 ("ps1_pv3_3pi_20170110", {"htm7"}, "Catalog", False), 

210 ("gaia_dr2_20200414", {"htm7"}, "Catalog", False), 

211 ], 

212 expected_inputs=COMMON_INPUTS 

213 | { 

214 "defects", 

215 "gaia_dr2_20200414", 

216 "linearizer", 

217 "overscanRaw", 

218 "ps1_pv3_3pi_20170110", 

219 }, 

220 expected_outputs=COMMON_OUTPUTS 

221 | { 

222 "goodSeeingCoadd", 

223 "goodSeeingCoadd_nImage", 

224 "goodSeeingVisits", 

225 "preSource", 

226 "preSourceTable", 

227 "preSourceTable_visit", 

228 "srcMatchFull", 

229 }, 

230 ) 

231 tester.run(butler, self) 

232 

233 def test_hsc_drp_ci_hsc(self): 

234 butler = self.makeButler(writeable=True) 

235 tester = PipelineStepTester( 

236 os.path.join(PIPELINES_DIR, "HSC", "DRP-ci_hsc.yaml"), 

237 [""], 

238 [ 

239 ("ps1_pv3_3pi_20170110", {"htm7"}, "Catalog", False), 

240 ("gaia_dr2_20200414", {"htm7"}, "Catalog", False), 

241 ], 

242 expected_inputs=COMMON_INPUTS 

243 | HSC_INPUTS 

244 | {"jointcalPhotoCalibCatalog", "jointcalSkyWcsCatalog"}, 

245 expected_outputs=COMMON_OUTPUTS 

246 | HSC_OUTPUTS 

247 | { 

248 "diaObjectTable_tract", 

249 "diaSourceTable", 

250 "diaSourceTable_tract", 

251 "forcedSourceOnDiaObjectTable", 

252 "forcedSourceOnDiaObjectTable_tract", 

253 "forcedSourceTable", 

254 "forcedSourceTable_tract", 

255 "forced_diff", 

256 "forced_diff_diaObject", 

257 "forced_src_diaObject", 

258 "goodSeeingCoadd", 

259 "goodSeeingCoadd_nImage", 

260 "goodSeeingDiff_assocDiaSrcTable", 

261 "goodSeeingDiff_diaObjTable", 

262 "goodSeeingDiff_diaSrc", 

263 "goodSeeingDiff_diaSrcTable", 

264 "goodSeeingDiff_differenceExp", 

265 "goodSeeingDiff_differenceTempExp", 

266 "goodSeeingDiff_fullDiaObjTable", 

267 "goodSeeingDiff_matchedExp", 

268 "goodSeeingDiff_templateExp", 

269 "goodSeeingVisits", 

270 "mergedForcedSource", 

271 "mergedForcedSourceOnDiaObject", 

272 "objectTable_tract_astrometryRefCat_match", 

273 "sourceTable_visit_astrometryRefCat_match", 

274 }, 

275 ) 

276 tester.run(butler, self) 

277 

278 def test_hsc_drp_prod(self): 

279 butler = self.makeButler(writeable=True) 

280 tester = PipelineStepTester( 

281 os.path.join(PIPELINES_DIR, "HSC", "DRP-Prod.yaml"), 

282 [ 

283 "#step1", 

284 "#step2a", 

285 "#step2b", 

286 "#step2c", 

287 "#step2d", 

288 "#step2e", 

289 "#step3", 

290 "#step4", 

291 "#step7", 

292 ], 

293 [ 

294 ("ps1_pv3_3pi_20170110", {"htm7"}, "Catalog", False), 

295 ("gaia_dr2_20200414", {"htm7"}, "Catalog", False), 

296 ], 

297 expected_inputs=COMMON_INPUTS | HSC_INPUTS | {"fgcmLookUpTable"}, 

298 expected_outputs=COMMON_OUTPUTS 

299 | HSC_OUTPUTS 

300 | { 

301 "fgcmAtmosphereParameters6", 

302 "fgcmFitParameters0", 

303 "fgcmFitParameters1", 

304 "fgcmFitParameters2", 

305 "fgcmFitParameters3", 

306 "fgcmFitParameters4", 

307 "fgcmFitParameters5", 

308 "fgcmFitParameters6", 

309 "fgcmFlaggedStars0", 

310 "fgcmFlaggedStars1", 

311 "fgcmFlaggedStars2", 

312 "fgcmFlaggedStars3", 

313 "fgcmFlaggedStars4", 

314 "fgcmFlaggedStars5", 

315 "fgcmFlaggedStars6", 

316 "fgcm_reference_stars", 

317 "fgcmStandardStars6", 

318 "fgcm_star_ids", 

319 "fgcm_star_observations", 

320 "fgcmZeropoints6", 

321 "transmission_atmosphere_fgcm", 

322 }, 

323 ) 

324 tester.run(butler, self) 

325 

326 def test_hsc_drp_rc2(self): 

327 butler = self.makeButler(writeable=True) 

328 tester = PipelineStepTester( 

329 os.path.join(PIPELINES_DIR, "HSC", "DRP-RC2.yaml"), 

330 [ 

331 "#step1", 

332 "#step2a", 

333 "#step2b", 

334 "#step2cde", 

335 "#step3", 

336 "#step4", 

337 "#step5", 

338 "#step6", 

339 "#step7", 

340 ], 

341 [ 

342 ("ps1_pv3_3pi_20170110", {"htm7"}, "Catalog", False), 

343 ("gaia_dr2_20200414", {"htm7"}, "Catalog", False), 

344 ], 

345 expected_inputs=COMMON_INPUTS | HSC_INPUTS | {"fgcmLookUpTable"}, 

346 expected_outputs=COMMON_OUTPUTS 

347 | HSC_OUTPUTS 

348 | { 

349 "diaObjectTable_tract", 

350 "diaSourceTable", 

351 "diaSourceTable_tract", 

352 "fgcmAtmosphereParameters4", 

353 "fgcmFitParameters0", 

354 "fgcmFitParameters1", 

355 "fgcmFitParameters2", 

356 "fgcmFitParameters3", 

357 "fgcmFitParameters4", 

358 "fgcmFlaggedStars0", 

359 "fgcmFlaggedStars1", 

360 "fgcmFlaggedStars2", 

361 "fgcmFlaggedStars3", 

362 "fgcmFlaggedStars4", 

363 "fgcm_reference_stars", 

364 "fgcmStandardStars4", 

365 "fgcm_star_ids", 

366 "fgcm_star_observations", 

367 "fgcmZeropoints4", 

368 "forcedSourceOnDiaObjectTable", 

369 "forcedSourceOnDiaObjectTable_tract", 

370 "forcedSourceTable", 

371 "forcedSourceTable_tract", 

372 "forced_diff", 

373 "forced_diff_diaObject", 

374 "forced_src_diaObject", 

375 "goodSeeingCoadd", 

376 "goodSeeingCoadd_nImage", 

377 "goodSeeingDiff_assocDiaSrcTable", 

378 "goodSeeingDiff_diaObjTable", 

379 "goodSeeingDiff_diaSrc", 

380 "goodSeeingDiff_diaSrcTable", 

381 "goodSeeingDiff_differenceExp", 

382 "goodSeeingDiff_differenceTempExp", 

383 "goodSeeingDiff_fullDiaObjTable", 

384 "goodSeeingDiff_matchedExp", 

385 "goodSeeingDiff_templateExp", 

386 "goodSeeingVisits", 

387 "mergedForcedSource", 

388 "mergedForcedSourceOnDiaObject", 

389 "transmission_atmosphere_fgcm", 

390 }, 

391 ) 

392 tester.run(butler, self) 

393 

394 def test_hsc_drp_rc2_subset(self): 

395 butler = self.makeButler(writeable=True) 

396 tester = PipelineStepTester( 

397 os.path.join(PIPELINES_DIR, "HSC", "DRP-RC2_subset.yaml"), 

398 [ 

399 "#nightlyStep1", 

400 "#nightlyStep2a", 

401 "#nightlyStep2b", 

402 "#nightlyStep2c", 

403 "#nightlyStep2d", 

404 "#nightlyStep3", 

405 "#nightlyStep4", 

406 "#nightlyStep5", 

407 ], 

408 [ 

409 ("ps1_pv3_3pi_20170110", {"htm7"}, "Catalog", False), 

410 ("gaia_dr2_20200414", {"htm7"}, "Catalog", False), 

411 ], 

412 expected_inputs=COMMON_INPUTS | HSC_INPUTS | {"fgcmLookUpTable"}, 

413 expected_outputs=COMMON_OUTPUTS 

414 | HSC_OUTPUTS 

415 | { 

416 "fgcmAtmosphereParameters4", 

417 "fgcmFitParameters0", 

418 "fgcmFitParameters1", 

419 "fgcmFitParameters2", 

420 "fgcmFitParameters3", 

421 "fgcmFitParameters4", 

422 "fgcmFlaggedStars0", 

423 "fgcmFlaggedStars1", 

424 "fgcmFlaggedStars2", 

425 "fgcmFlaggedStars3", 

426 "fgcmFlaggedStars4", 

427 "fgcm_reference_stars", 

428 "fgcmStandardStars4", 

429 "fgcm_star_ids", 

430 "fgcm_star_observations", 

431 "fgcmZeropoints4", 

432 "transmission_atmosphere_fgcm", 

433 }, 

434 ) 

435 tester.run(butler, self) 

436 

437 def test_lsstcam_imsim_drp_ci_imsim(self): 

438 butler = self.makeButler(writeable=True) 

439 tester = PipelineStepTester( 

440 os.path.join(PIPELINES_DIR, "LSSTCam-imSim", "DRP-ci_imsim.yaml"), 

441 [f"#step{N}" for N in range(1, 9)], 

442 [ 

443 ("cal_ref_cat_2_2", {"htm7"}, "Catalog", False), 

444 ], 

445 expected_inputs=COMMON_INPUTS | LSSTCAM_IMSIM_INPUTS, 

446 expected_outputs=COMMON_OUTPUTS | LSSTCAM_IMSIM_OUTPUTS, 

447 ) 

448 tester.run(butler, self) 

449 

450 def test_lsstcam_imsim_drp_test_med_1(self): 

451 butler = self.makeButler(writeable=True) 

452 tester = PipelineStepTester( 

453 os.path.join(PIPELINES_DIR, "LSSTCam-imSim", "DRP-test-med-1.yaml"), 

454 [f"#step{N}" for N in range(1, 9)], 

455 [ 

456 ("cal_ref_cat_2_2", {"htm7"}, "Catalog", False), 

457 ], 

458 expected_inputs=COMMON_INPUTS | LSSTCAM_IMSIM_INPUTS, 

459 expected_outputs=COMMON_OUTPUTS | LSSTCAM_IMSIM_OUTPUTS, 

460 ) 

461 tester.run(butler, self) 

462 

463 

464if __name__ == "__main__": 464 ↛ 465line 464 didn't jump to line 465, because the condition on line 464 was never true

465 unittest.main()