lsst.dax.apdb ga786bb30fb+4e2285b45d
Public Member Functions | Public Attributes | Static Public Attributes | List of all members
lsst.dax.apdb.apdbSql.ApdbSql Class Reference
Inheritance diagram for lsst.dax.apdb.apdbSql.ApdbSql:
lsst.dax.apdb.apdb.Apdb

Public Member Functions

def __init__ (self, ApdbSqlConfig config)
 
Dict[str, int] tableRowCount (self)
 
Optional[TableDeftableDef (self, ApdbTables table)
 
None makeSchema (self, bool drop=False)
 
pandas.DataFrame getDiaObjects (self, Region region)
 
Optional[pandas.DataFrame] getDiaSources (self, Region region, Optional[Iterable[int]] object_ids, dafBase.DateTime visit_time)
 
Optional[pandas.DataFrame] getDiaForcedSources (self, Region region, Optional[Iterable[int]] object_ids, dafBase.DateTime visit_time)
 
pandas.DataFrame getDiaObjectsHistory (self, dafBase.DateTime start_time, dafBase.DateTime end_time, Optional[Region] region=None)
 
pandas.DataFrame getDiaSourcesHistory (self, dafBase.DateTime start_time, dafBase.DateTime end_time, Optional[Region] region=None)
 
pandas.DataFrame getDiaForcedSourcesHistory (self, dafBase.DateTime start_time, dafBase.DateTime end_time, Optional[Region] region=None)
 
pandas.DataFrame getSSObjects (self)
 
None store (self, dafBase.DateTime visit_time, pandas.DataFrame objects, Optional[pandas.DataFrame] sources=None, Optional[pandas.DataFrame] forced_sources=None)
 
None storeSSObjects (self, pandas.DataFrame objects)
 
None reassignDiaSources (self, Mapping[int, int] idMap)
 
None dailyJob (self)
 
int countUnassociatedObjects (self)
 
- Public Member Functions inherited from lsst.dax.apdb.apdb.Apdb
Optional[TableDeftableDef (self, ApdbTables table)
 
None makeSchema (self, bool drop=False)
 
pandas.DataFrame getDiaObjects (self, Region region)
 
Optional[pandas.DataFrame] getDiaSources (self, Region region, Optional[Iterable[int]] object_ids, dafBase.DateTime visit_time)
 
Optional[pandas.DataFrame] getDiaForcedSources (self, Region region, Optional[Iterable[int]] object_ids, dafBase.DateTime visit_time)
 
pandas.DataFrame getDiaObjectsHistory (self, dafBase.DateTime start_time, dafBase.DateTime end_time, Optional[Region] region=None)
 
pandas.DataFrame getDiaSourcesHistory (self, dafBase.DateTime start_time, dafBase.DateTime end_time, Optional[Region] region=None)
 
pandas.DataFrame getDiaForcedSourcesHistory (self, dafBase.DateTime start_time, dafBase.DateTime end_time, Optional[Region] region=None)
 
pandas.DataFrame getSSObjects (self)
 
None store (self, dafBase.DateTime visit_time, pandas.DataFrame objects, Optional[pandas.DataFrame] sources=None, Optional[pandas.DataFrame] forced_sources=None)
 
None storeSSObjects (self, pandas.DataFrame objects)
 
None reassignDiaSources (self, Mapping[int, int] idMap)
 
None dailyJob (self)
 
int countUnassociatedObjects (self)
 
ConfigurableField makeField (cls, str doc)
 

Public Attributes

 config
 
 pixelator
 

Static Public Attributes

 ConfigClass = ApdbSqlConfig
 
- Static Public Attributes inherited from lsst.dax.apdb.apdb.Apdb
 ConfigClass = ApdbConfig
 

Detailed Description

Implementation of APDB interface based on SQL database.

The implementation is configured via standard ``pex_config`` mechanism
using `ApdbSqlConfig` configuration class. For an example of different
configurations check ``config/`` folder.

Parameters
----------
config : `ApdbSqlConfig`
    Configuration object.

Member Function Documentation

◆ countUnassociatedObjects()

int lsst.dax.apdb.apdbSql.ApdbSql.countUnassociatedObjects (   self)
Return the number of DiaObjects that have only one DiaSource
associated with them.

Used as part of ap_verify metrics.

Returns
-------
count : `int`
    Number of DiaObjects with exactly one associated DiaSource.

Notes
-----
This method can be very inefficient or slow in some implementations.

Reimplemented from lsst.dax.apdb.apdb.Apdb.

◆ dailyJob()

None lsst.dax.apdb.apdbSql.ApdbSql.dailyJob (   self)
Implement daily activities like cleanup/vacuum.

What should be done during daily activities is determined by
specific implementation.

Reimplemented from lsst.dax.apdb.apdb.Apdb.

◆ getDiaForcedSources()

Optional[pandas.DataFrame] lsst.dax.apdb.apdbSql.ApdbSql.getDiaForcedSources (   self,
Region  region,
Optional[Iterable[int]]  object_ids,
dafBase.DateTime  visit_time 
)
Return catalog of DiaForcedSource instances from a given region.

Parameters
----------
region : `lsst.sphgeom.Region`
    Region to search for DIASources.
object_ids : iterable [ `int` ], optional
    List of DiaObject IDs to further constrain the set of returned
    sources. If list is empty then empty catalog is returned with a
    correct schema.
visit_time : `lsst.daf.base.DateTime`
    Time of the current visit.

Returns
-------
catalog : `pandas.DataFrame`, or `None`
    Catalog containing DiaSource records. `None` is returned if
    ``read_sources_months`` configuration parameter is set to 0.

Raises
------
NotImplementedError
    Raised if ``object_ids`` is `None`.

Notes
-----
Even though base class allows `None` to be passed for ``object_ids``,
this class requires ``object_ids`` to be not-`None`.
`NotImplementedError` is raised if `None` is passed.

This method returns DiaForcedSource catalog for a region with additional
filtering based on DiaObject IDs. Only a subset of DiaSource history
is returned limited by ``read_forced_sources_months`` config parameter,
w.r.t. ``visit_time``. If ``object_ids`` is empty then an empty catalog
is always returned with a correct schema (columns/types).

Reimplemented from lsst.dax.apdb.apdb.Apdb.

◆ getDiaForcedSourcesHistory()

pandas.DataFrame lsst.dax.apdb.apdbSql.ApdbSql.getDiaForcedSourcesHistory (   self,
dafBase.DateTime  start_time,
dafBase.DateTime  end_time,
Optional[Region]   region = None 
)
Returns catalog of DiaForcedSource instances from a given time
period.

Parameters
----------
start_time : `dafBase.DateTime`
    Starting time for DiaForcedSource history search. DiaForcedSource
    record is selected when its ``midPointTai`` falls into an interval
    between ``start_time`` (inclusive) and ``end_time`` (exclusive).
end_time : `dafBase.DateTime`
    Upper limit on time for DiaForcedSource history search.
region : `lsst.sphgeom.Region`, optional
    Region to search for DiaForcedSources, if not specified then whole
    sky is searched. If region is specified then some returned records
    may fall outside of this region.

Returns
-------
catalog : `pandas.DataFrame`
    Catalog containing DiaObject records.

Notes
-----
This part of API may not be very stable and can change before the
implementation finalizes. Some implementations may not support region
filtering, they will return records from the whole sky.

Reimplemented from lsst.dax.apdb.apdb.Apdb.

◆ getDiaObjects()

pandas.DataFrame lsst.dax.apdb.apdbSql.ApdbSql.getDiaObjects (   self,
Region  region 
)
Returns catalog of DiaObject instances from a given region.

This method returns only the last version of each DiaObject. Some
records in a returned catalog may be outside the specified region, it
is up to a client to ignore those records or cleanup the catalog before
futher use.

Parameters
----------
region : `lsst.sphgeom.Region`
    Region to search for DIAObjects.

Returns
-------
catalog : `pandas.DataFrame`
    Catalog containing DiaObject records for a region that may be a
    superset of the specified region.

Reimplemented from lsst.dax.apdb.apdb.Apdb.

◆ getDiaObjectsHistory()

pandas.DataFrame lsst.dax.apdb.apdbSql.ApdbSql.getDiaObjectsHistory (   self,
dafBase.DateTime  start_time,
dafBase.DateTime  end_time,
Optional[Region]   region = None 
)
Returns catalog of DiaObject instances from a given time period
including the history of each DiaObject.

Parameters
----------
start_time : `dafBase.DateTime`
    Starting time for DiaObject history search. DiaObject record is
    selected when its ``validityStart`` falls into an interval
    between ``start_time`` (inclusive) and ``end_time`` (exclusive).
end_time : `dafBase.DateTime`
    Upper limit on time for DiaObject history search.
region : `lsst.sphgeom.Region`, optional
    Region to search for DiaObjects, if not specified then whole sky
    is searched. If region is specified then some returned records may
    fall outside of this region.

Returns
-------
catalog : `pandas.DataFrame`
    Catalog containing DiaObject records.

Notes
-----
This part of API may not be very stable and can change before the
implementation finalizes.

Reimplemented from lsst.dax.apdb.apdb.Apdb.

◆ getDiaSources()

Optional[pandas.DataFrame] lsst.dax.apdb.apdbSql.ApdbSql.getDiaSources (   self,
Region  region,
Optional[Iterable[int]]  object_ids,
dafBase.DateTime  visit_time 
)
Return catalog of DiaSource instances from a given region.

Parameters
----------
region : `lsst.sphgeom.Region`
    Region to search for DIASources.
object_ids : iterable [ `int` ], optional
    List of DiaObject IDs to further constrain the set of returned
    sources. If `None` then returned sources are not constrained. If
    list is empty then empty catalog is returned with a correct
    schema.
visit_time : `lsst.daf.base.DateTime`
    Time of the current visit.

Returns
-------
catalog : `pandas.DataFrame`, or `None`
    Catalog containing DiaSource records. `None` is returned if
    ``read_sources_months`` configuration parameter is set to 0.

Notes
-----
This method returns DiaSource catalog for a region with additional
filtering based on DiaObject IDs. Only a subset of DiaSource history
is returned limited by ``read_sources_months`` config parameter, w.r.t.
``visit_time``. If ``object_ids`` is empty then an empty catalog is
always returned with the correct schema (columns/types). If
``object_ids`` is `None` then no filtering is performed and some of the
returned records may be outside the specified region.

Reimplemented from lsst.dax.apdb.apdb.Apdb.

◆ getDiaSourcesHistory()

pandas.DataFrame lsst.dax.apdb.apdbSql.ApdbSql.getDiaSourcesHistory (   self,
dafBase.DateTime  start_time,
dafBase.DateTime  end_time,
Optional[Region]   region = None 
)
Returns catalog of DiaSource instances from a given time period.

Parameters
----------
start_time : `dafBase.DateTime`
    Starting time for DiaSource history search. DiaSource record is
    selected when its ``midPointTai`` falls into an interval between
    ``start_time`` (inclusive) and ``end_time`` (exclusive).
end_time : `dafBase.DateTime`
    Upper limit on time for DiaSource history search.
region : `lsst.sphgeom.Region`, optional
    Region to search for DiaSources, if not specified then whole sky
    is searched. If region is specified then some returned records may
    fall outside of this region.

Returns
-------
catalog : `pandas.DataFrame`
    Catalog containing DiaObject records.

Notes
-----
This part of API may not be very stable and can change before the
implementation finalizes.

Reimplemented from lsst.dax.apdb.apdb.Apdb.

◆ getSSObjects()

pandas.DataFrame lsst.dax.apdb.apdbSql.ApdbSql.getSSObjects (   self)
Returns catalog of SSObject instances.

Returns
-------
catalog : `pandas.DataFrame`
    Catalog containing SSObject records, all existing records are
    returned.

Reimplemented from lsst.dax.apdb.apdb.Apdb.

◆ makeSchema()

None lsst.dax.apdb.apdbSql.ApdbSql.makeSchema (   self,
bool   drop = False 
)
Create or re-create whole database schema.

Parameters
----------
drop : `bool`
    If True then drop all tables before creating new ones.

Reimplemented from lsst.dax.apdb.apdb.Apdb.

◆ reassignDiaSources()

None lsst.dax.apdb.apdbSql.ApdbSql.reassignDiaSources (   self,
Mapping[int, int]  idMap 
)
Associate DiaSources with SSObjects, dis-associating them
from DiaObjects.

Parameters
----------
idMap : `Mapping`
    Maps DiaSource IDs to their new SSObject IDs.

Raises
------
ValueError
    Raised if DiaSource ID does not exist in the database.

Reimplemented from lsst.dax.apdb.apdb.Apdb.

◆ store()

None lsst.dax.apdb.apdbSql.ApdbSql.store (   self,
dafBase.DateTime  visit_time,
pandas.DataFrame  objects,
Optional[pandas.DataFrame]   sources = None,
Optional[pandas.DataFrame]   forced_sources = None 
)
Store all three types of catalogs in the database.

Parameters
----------
visit_time : `lsst.daf.base.DateTime`
    Time of the visit.
objects : `pandas.DataFrame`
    Catalog with DiaObject records.
sources : `pandas.DataFrame`, optional
    Catalog with DiaSource records.
forced_sources : `pandas.DataFrame`, optional
    Catalog with DiaForcedSource records.

Notes
-----
This methods takes DataFrame catalogs, their schema must be
compatible with the schema of APDB table:

  - column names must correspond to database table columns
  - types and units of the columns must match database definitions,
    no unit conversion is performed presently
  - columns that have default values in database schema can be
    omitted from catalog
  - this method knows how to fill interval-related columns of DiaObject
    (validityStart, validityEnd) they do not need to appear in a
    catalog
  - source catalogs have ``diaObjectId`` column associating sources
    with objects

Reimplemented from lsst.dax.apdb.apdb.Apdb.

◆ storeSSObjects()

None lsst.dax.apdb.apdbSql.ApdbSql.storeSSObjects (   self,
pandas.DataFrame  objects 
)
Store or update SSObject catalog.

Parameters
----------
objects : `pandas.DataFrame`
    Catalog with SSObject records.

Notes
-----
If SSObjects with matching IDs already exist in the database, their
records will be updated with the information from provided records.

Reimplemented from lsst.dax.apdb.apdb.Apdb.

◆ tableDef()

Optional[TableDef] lsst.dax.apdb.apdbSql.ApdbSql.tableDef (   self,
ApdbTables  table 
)
Return table schema definition for a given table.

Parameters
----------
table : `ApdbTables`
    One of the known APDB tables.

Returns
-------
tableSchema : `TableDef` or `None`
    Table schema description, `None` is returned if table is not
    defined by this implementation.

Reimplemented from lsst.dax.apdb.apdb.Apdb.

◆ tableRowCount()

Dict[str, int] lsst.dax.apdb.apdbSql.ApdbSql.tableRowCount (   self)
Returns dictionary with the table names and row counts.

Used by ``ap_proto`` to keep track of the size of the database tables.
Depending on database technology this could be expensive operation.

Returns
-------
row_counts : `dict`
    Dict where key is a table name and value is a row count.

The documentation for this class was generated from the following file: