Coverage for python/lsst/obs/base/script/convert.py: 20%

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1# This file is part of obs_base. 

2# 

3# Developed for the LSST Data Management System. 

4# This product includes software developed by the LSST Project 

5# (http://www.lsst.org). 

6# See the COPYRIGHT file at the top-level directory of this distribution 

7# for details of code ownership. 

8# 

9# This program is free software: you can redistribute it and/or modify 

10# it under the terms of the GNU General Public License as published by 

11# the Free Software Foundation, either version 3 of the License, or 

12# (at your option) any later version. 

13# 

14# This program is distributed in the hope that it will be useful, 

15# but WITHOUT ANY WARRANTY; without even the implied warranty of 

16# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 

17# GNU General Public License for more details. 

18# 

19# You should have received a copy of the GNU General Public License 

20# along with this program. If not, see <http://www.gnu.org/licenses/>. 

21 

22"""Convert a gen2 butler repo to gen 3. See 

23`lsst.obs.base.ConvertRepoConfig` for most of the config options. 

24""" 

25 

26from lsst.daf.persistence import Butler as Butler2 

27import lsst.daf.butler 

28from lsst.log import Log 

29import lsst.utils 

30from lsst.log.utils import temporaryLogLevel 

31 

32from ..gen2to3 import CalibRepo, ConvertRepoTask, ConvertRepoSkyMapConfig, Rerun 

33 

34 

35def convert(repo, gen2root, skymap_name, skymap_config, calibs, reruns, config_file, transfer, processes=1): 

36 """Implements the command line interface `butler convert` subcommand, 

37 should only be called by command line tools and unit test code that tests 

38 this function. 

39 

40 Convert the gen 2 Butler repo at `gen2root` into a gen 3 repo 

41 living at `repo`. 

42 

43 Parameters 

44 ---------- 

45 repo : `str` 

46 URI to the gen 3 repository. 

47 gen2root : `str` 

48 URI to the gen 2 repository. 

49 skymap_name : `str` or None 

50 Name of the skymap to be converted in the repo. 

51 skymap_config : `str` or None 

52 Path to the `lsst.skymap.BaseSkyMapConfig` of the gen2 skymap to be 

53 converted. 

54 calibs : `str` or None 

55 Path to the gen2 calibration repository to be converted. 

56 If a relative path, it is assumed to be relative to `gen2root`. 

57 reruns : `list` [`str`] or None 

58 List of rerun paths to convert. Output collection names will be 

59 guessed, which can fail if the Gen2 repository paths do not follow a 

60 recognized convention. In this case, the command-line interface cannot 

61 be used. 

62 config_file : `str` or None 

63 Path to `lsst.obs.base.ConvertRepoConfig` configuration to load 

64 after all default/instrument configurations. 

65 transfer : `str` or None 

66 Mode to use when transferring data into the gen3 repository. 

67 processess : `int` 

68 Number of processes to use for conversion. 

69 """ 

70 # Allow a gen3 butler to be reused 

71 try: 

72 butlerConfig = lsst.daf.butler.Butler.makeRepo(repo) 

73 except FileExistsError: 

74 # Use the existing butler configuration 

75 butlerConfig = repo 

76 

77 butler = lsst.daf.butler.Butler(butlerConfig) 

78 

79 # Derive the gen3 instrument from the gen2root 

80 # This requires we instantiate a gen2 butler solely to get its mapper 

81 # Hide all logging -- the later call will show them 

82 with temporaryLogLevel("", Log.ERROR): 

83 butler2 = Butler2(gen2root) 

84 gen2mapperClass = butler2.getMapperClass(gen2root) 

85 del butler2 

86 

87 instrument = gen2mapperClass.getGen3Instrument()() 

88 

89 convertRepoConfig = ConvertRepoTask.ConfigClass() 

90 instrument.applyConfigOverrides(ConvertRepoTask._DefaultName, convertRepoConfig) 

91 convertRepoConfig.raws.transfer = transfer 

92 if skymap_name is not None: 

93 convertRepoConfig.skyMaps[skymap_name] = ConvertRepoSkyMapConfig() 

94 convertRepoConfig.skyMaps[skymap_name].load(skymap_config) 

95 convertRepoConfig.rootSkyMapName = skymap_name 

96 if config_file is not None: 

97 convertRepoConfig.load(config_file) 

98 

99 if reruns is None: 

100 rerunsArg = [] 

101 else: 

102 rerunsArg = [Rerun(rerun, runName=None, chainName=None, parents=[]) for rerun in reruns] 

103 

104 # create a new butler instance for running the convert repo task 

105 butler = lsst.daf.butler.Butler(butlerConfig, run=instrument.makeDefaultRawIngestRunName()) 

106 convertRepoTask = ConvertRepoTask(config=convertRepoConfig, butler3=butler, instrument=instrument) 

107 convertRepoTask.run( 

108 root=gen2root, 

109 reruns=rerunsArg, 

110 calibs=None if calibs is None else [CalibRepo(path=calibs)], 

111 processes=processes, 

112 )