Coverage for python/lsst/fgcmcal/fgcmCalibrateTractBase.py : 14%

Hot-keys on this page
r m x p toggle line displays
j k next/prev highlighted chunk
0 (zero) top of page
1 (one) first highlighted chunk
1# This file is part of fgcmcal.
2#
3# Developed for the LSST Data Management System.
4# This product includes software developed by the LSST Project
5# (https://www.lsst.org).
6# See the COPYRIGHT file at the top-level directory of this distribution
7# for details of code ownership.
8#
9# This program is free software: you can redistribute it and/or modify
10# it under the terms of the GNU General Public License as published by
11# the Free Software Foundation, either version 3 of the License, or
12# (at your option) any later version.
13#
14# This program is distributed in the hope that it will be useful,
15# but WITHOUT ANY WARRANTY; without even the implied warranty of
16# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17# GNU General Public License for more details.
18#
19# You should have received a copy of the GNU General Public License
20# along with this program. If not, see <https://www.gnu.org/licenses/>.
21"""Base class for running fgcmcal on a single tract using src tables
22or sourceTable_visit tables.
23"""
25import sys
26import traceback
27import abc
29import numpy as np
31import lsst.daf.persistence as dafPersist
32import lsst.pex.config as pexConfig
33import lsst.pipe.base as pipeBase
35from .fgcmBuildStars import FgcmBuildStarsTask, FgcmBuildStarsConfig
36from .fgcmFitCycle import FgcmFitCycleConfig
37from .fgcmOutputProducts import FgcmOutputProductsTask
38from .utilities import makeConfigDict, translateFgcmLut, translateVisitCatalog
39from .utilities import computeCcdOffsets, computeApertureRadiusFromDataRef, extractReferenceMags
40from .utilities import makeZptSchema, makeZptCat
41from .utilities import makeAtmSchema, makeAtmCat
42from .utilities import makeStdSchema, makeStdCat
44import fgcm
46__all__ = ['FgcmCalibrateTractConfigBase', 'FgcmCalibrateTractBaseTask', 'FgcmCalibrateTractRunner']
49class FgcmCalibrateTractConfigBase(pexConfig.Config):
50 """Config for FgcmCalibrateTract"""
52 fgcmBuildStars = pexConfig.ConfigurableField(
53 target=FgcmBuildStarsTask,
54 doc="Task to load and match stars for fgcm",
55 )
56 fgcmFitCycle = pexConfig.ConfigField(
57 dtype=FgcmFitCycleConfig,
58 doc="Config to run a single fgcm fit cycle",
59 )
60 fgcmOutputProducts = pexConfig.ConfigurableField(
61 target=FgcmOutputProductsTask,
62 doc="Task to output fgcm products",
63 )
64 convergenceTolerance = pexConfig.Field(
65 doc="Tolerance on repeatability convergence (per band)",
66 dtype=float,
67 default=0.005,
68 )
69 maxFitCycles = pexConfig.Field(
70 doc="Maximum number of fit cycles",
71 dtype=int,
72 default=5,
73 )
74 doDebuggingPlots = pexConfig.Field(
75 doc="Make plots for debugging purposes?",
76 dtype=bool,
77 default=False,
78 )
80 def setDefaults(self):
81 pexConfig.Config.setDefaults(self)
83 self.fgcmFitCycle.quietMode = True
84 self.fgcmOutputProducts.doReferenceCalibration = False
85 self.fgcmOutputProducts.doRefcatOutput = False
86 self.fgcmOutputProducts.cycleNumber = 0
87 self.fgcmOutputProducts.photoCal.applyColorTerms = False
89 def validate(self):
90 super().validate()
92 for band in self.fgcmFitCycle.bands:
93 if not self.fgcmFitCycle.useRepeatabilityForExpGrayCutsDict[band]:
94 msg = 'Must set useRepeatabilityForExpGrayCutsDict[band]=True for all bands'
95 raise pexConfig.FieldValidationError(FgcmFitCycleConfig.useRepeatabilityForExpGrayCutsDict,
96 self, msg)
99class FgcmCalibrateTractRunner(pipeBase.ButlerInitializedTaskRunner):
100 """Subclass of TaskRunner for FgcmCalibrateTractTask
102 fgcmCalibrateTractTask.run() takes a number of arguments, one of which is
103 the butler (for persistence and mapper data), and a list of dataRefs
104 extracted from the command line. This task runs on a constrained set
105 of dataRefs, typically a single tract.
106 This class transforms the process arguments generated by the ArgumentParser
107 into the arguments expected by FgcmCalibrateTractTask.run().
108 This runner does not use any parallelization.
109 """
111 @staticmethod
112 def getTargetList(parsedCmd):
113 """
114 Return a list with one element: a tuple with the butler and
115 list of dataRefs.
116 """
117 return [(parsedCmd.butler, parsedCmd.id.refList)]
119 def __call__(self, args):
120 """
121 Parameters
122 ----------
123 args: `tuple` with (butler, dataRefList)
125 Returns
126 -------
127 exitStatus: `list` with `lsst.pipe.base.Struct`
128 exitStatus (0: success; 1: failure)
129 May also contain results if `self.doReturnResults` is `True`.
130 """
131 butler, dataRefList = args
133 task = self.TaskClass(config=self.config, log=self.log)
135 exitStatus = 0
136 if self.doRaise:
137 results = task.runDataRef(butler, dataRefList)
138 else:
139 try:
140 results = task.runDataRef(butler, dataRefList)
141 except Exception as e:
142 exitStatus = 1
143 task.log.fatal("Failed: %s" % e)
144 if not isinstance(e, pipeBase.TaskError):
145 traceback.print_exc(file=sys.stderr)
147 task.writeMetadata(butler)
149 if self.doReturnResults:
150 return [pipeBase.Struct(exitStatus=exitStatus,
151 results=results)]
152 else:
153 return [pipeBase.Struct(exitStatus=exitStatus)]
155 def run(self, parsedCmd):
156 """
157 Run the task, with no multiprocessing
159 Parameters
160 ----------
161 parsedCmd: `lsst.pipe.base.ArgumentParser` parsed command line
162 """
164 resultList = []
166 if self.precall(parsedCmd):
167 targetList = self.getTargetList(parsedCmd)
168 resultList = self(targetList[0])
170 return resultList
173class FgcmCalibrateTractBaseTask(pipeBase.PipelineTask, pipeBase.CmdLineTask, abc.ABC):
174 """Base class to calibrate a single tract using fgcmcal
175 """
176 def __init__(self, butler=None, **kwargs):
177 """
178 Instantiate an `FgcmCalibrateTractTask`.
180 Parameters
181 ----------
182 butler : `lsst.daf.persistence.Butler`, optional
183 """
184 super().__init__(**kwargs)
185 self.makeSubtask("fgcmBuildStars", butler=butler)
186 self.makeSubtask("fgcmOutputProducts", butler=butler)
188 # no saving of metadata for now
189 def _getMetadataName(self):
190 return None
192 @pipeBase.timeMethod
193 def runDataRef(self, butler, dataRefs):
194 """
195 Run full FGCM calibration on a single tract, including building star list,
196 fitting multiple cycles, and making outputs.
198 Parameters
199 ----------
200 butler: `lsst.daf.persistence.Butler`
201 dataRefs: `list` of `lsst.daf.persistence.ButlerDataRef`
202 Data references for the input visits.
203 These may be either per-ccd "src" or per-visit"sourceTable_visit"
204 references.
206 Raises
207 ------
208 RuntimeError: Raised if `config.fgcmBuildStars.doReferenceMatches` is
209 not True, or if fgcmLookUpTable is not available, or if
210 doSubtractLocalBackground is True and aperture radius cannot be
211 determined.
212 """
213 datasetType = dataRefs[0].butlerSubset.datasetType
214 self.log.info("Running with %d %s dataRefs" % (len(dataRefs), datasetType))
216 if not butler.datasetExists('fgcmLookUpTable'):
217 raise RuntimeError("Must run FgcmCalibrateTract with an fgcmLookUpTable")
219 if not self.config.fgcmBuildStars.doReferenceMatches:
220 raise RuntimeError("Must run FgcmCalibrateTract with fgcmBuildStars.doReferenceMatches")
221 if isinstance(self.config.fgcmBuildStars, FgcmBuildStarsConfig):
222 if self.config.fgcmBuildStars.checkAllCcds:
223 raise RuntimeError("Cannot run FgcmCalibrateTract with "
224 "fgcmBuildStars.checkAllCcds set to True")
226 tract = int(dataRefs[0].dataId['tract'])
227 camera = butler.get('camera')
229 dataRefDict = {}
230 dataRefDict['camera'] = camera
231 dataRefDict['source_catalogs'] = dataRefs
232 dataRefDict['sourceSchema'] = butler.dataRef('src_schema')
233 dataRefDict['fgcmLookUpTable'] = butler.dataRef('fgcmLookUpTable')
235 struct = self.run(dataRefDict, tract, butler=butler, returnCatalogs=False)
237 visitDataRefName = self.config.fgcmBuildStars.visitDataRefName
238 ccdDataRefName = self.config.fgcmBuildStars.ccdDataRefName
240 if struct.photoCalibs is not None:
241 self.log.info("Outputting photoCalib files.")
243 for visit, detector, physicalFilter, photoCalib in struct.photoCalibs:
244 butler.put(photoCalib, 'fgcm_tract_photoCalib',
245 dataId={visitDataRefName: visit,
246 ccdDataRefName: detector,
247 'filter': physicalFilter,
248 'tract': tract})
250 self.log.info("Done outputting photoCalib files.")
252 if struct.atmospheres is not None:
253 self.log.info("Outputting atmosphere files.")
254 for visit, atm in struct.atmospheres:
255 butler.put(atm, "transmission_atmosphere_fgcm_tract",
256 dataId={visitDataRefName: visit,
257 'tract': tract})
258 self.log.info("Done outputting atmosphere transmissions.")
260 return pipeBase.Struct(repeatability=struct.repeatability)
262 def run(self, dataRefDict, tract,
263 buildStarsRefObjLoader=None, returnCatalogs=True, butler=None):
264 """Run the calibrations for a single tract with fgcm.
266 Parameters
267 ----------
268 dataRefDict : `dict`
269 All dataRefs are `lsst.daf.persistence.ButlerDataRef` (gen2) or
270 `lsst.daf.butler.DeferredDatasetHandle` (gen3)
271 dataRef dictionary with the following keys. Note that all
272 keys need not be set based on config parameters.
274 ``"camera"``
275 Camera object (`lsst.afw.cameraGeom.Camera`)
276 ``"source_catalogs"``
277 `list` of dataRefs for input source catalogs.
278 ``"sourceSchema"``
279 Schema for the source catalogs.
280 ``"fgcmLookUpTable"``
281 dataRef for the FGCM look-up table.
282 ``"calexps"``
283 `list` of dataRefs for the input calexps (Gen3 only)
284 ``"fgcmPhotoCalibs"``
285 `dict` of output photoCalib dataRefs. Key is
286 (tract, visit, detector). (Gen3 only)
287 Present if doZeropointOutput is True.
288 ``"fgcmTransmissionAtmospheres"``
289 `dict` of output atmosphere transmission dataRefs.
290 Key is (tract, visit). (Gen3 only)
291 Present if doAtmosphereOutput is True.
292 tract : `int`
293 Tract number
294 buildStarsRefObjLoader : `lsst.meas.algorithms.ReferenceObjectLoader`, optional
295 Reference object loader object for fgcmBuildStars.
296 returnCatalogs : `bool`, optional
297 Return photoCalibs as per-visit exposure catalogs.
298 butler : `lsst.daf.persistence.Butler`, optional
299 Gen2 butler used for reference star outputs
301 Returns
302 -------
303 outstruct : `lsst.pipe.base.Struct`
304 Output structure with keys:
306 offsets : `np.ndarray`
307 Final reference offsets, per band.
308 repeatability : `np.ndarray`
309 Raw fgcm repeatability for bright stars, per band.
310 atmospheres : `generator` [(`int`, `lsst.afw.image.TransmissionCurve`)]
311 Generator that returns (visit, transmissionCurve) tuples.
312 photoCalibs : `generator` [(`int`, `int`, `str`, `lsst.afw.image.PhotoCalib`)]
313 Generator that returns (visit, ccd, filtername, photoCalib) tuples.
314 (returned if returnCatalogs is False).
315 photoCalibCatalogs : `generator` [(`int`, `lsst.afw.table.ExposureCatalog`)]
316 Generator that returns (visit, exposureCatalog) tuples.
317 (returned if returnCatalogs is True).
318 """
319 self.log.info("Running on tract %d", (tract))
321 # Compute the aperture radius if necessary. This is useful to do now before
322 # any heavy lifting has happened (fail early).
323 calibFluxApertureRadius = None
324 if self.config.fgcmBuildStars.doSubtractLocalBackground:
325 try:
326 field = self.config.fgcmBuildStars.instFluxField
327 calibFluxApertureRadius = computeApertureRadiusFromDataRef(dataRefDict['source_catalogs'][0],
328 field)
329 except RuntimeError:
330 raise RuntimeError("Could not determine aperture radius from %s. "
331 "Cannot use doSubtractLocalBackground." %
332 (field))
334 # Run the build stars tasks
336 # Note that we will need visitCat at the end of the procedure for the outputs
337 if isinstance(butler, dafPersist.Butler):
338 # Gen2
339 groupedDataRefs = self.fgcmBuildStars._findAndGroupDataRefs(dataRefDict['camera'],
340 dataRefDict['source_catalogs'],
341 butler=butler)
342 else:
343 # Gen3
344 cdrd = dataRefDict['calexps']
345 groupedDataRefs = self.fgcmBuildStars._findAndGroupDataRefs(dataRefDict['camera'],
346 dataRefDict['source_catalogs'],
347 calexpDataRefDict=cdrd)
348 visitCat = self.fgcmBuildStars.fgcmMakeVisitCatalog(dataRefDict['camera'], groupedDataRefs)
349 rad = calibFluxApertureRadius
350 fgcmStarObservationCat = self.fgcmBuildStars.fgcmMakeAllStarObservations(groupedDataRefs,
351 visitCat,
352 dataRefDict['sourceSchema'],
353 dataRefDict['camera'],
354 calibFluxApertureRadius=rad)
356 if self.fgcmBuildStars.config.doReferenceMatches:
357 lutDataRef = dataRefDict['fgcmLookUpTable']
358 if buildStarsRefObjLoader is not None:
359 self.fgcmBuildStars.makeSubtask("fgcmLoadReferenceCatalog",
360 refObjLoader=buildStarsRefObjLoader)
361 else:
362 self.fgcmBuildStars.makeSubtask("fgcmLoadReferenceCatalog", butler=butler)
363 else:
364 lutDataRef = None
366 fgcmStarIdCat, fgcmStarIndicesCat, fgcmRefCat = \
367 self.fgcmBuildStars.fgcmMatchStars(visitCat,
368 fgcmStarObservationCat,
369 lutDataRef=lutDataRef)
371 # Load the LUT
372 lutCat = dataRefDict['fgcmLookUpTable'].get()
373 fgcmLut, lutIndexVals, lutStd = translateFgcmLut(lutCat,
374 dict(self.config.fgcmFitCycle.physicalFilterMap))
375 del lutCat
377 # Translate the visit catalog into fgcm format
378 fgcmExpInfo = translateVisitCatalog(visitCat)
380 configDict = makeConfigDict(self.config.fgcmFitCycle, self.log, dataRefDict['camera'],
381 self.config.fgcmFitCycle.maxIterBeforeFinalCycle,
382 True, False, tract=tract)
383 # Turn off plotting in tract mode
384 configDict['doPlots'] = False
386 # Use the first orientation.
387 # TODO: DM-21215 will generalize to arbitrary camera orientations
388 ccdOffsets = computeCcdOffsets(dataRefDict['camera'], fgcmExpInfo['TELROT'][0])
390 # Set up the fit cycle task
392 noFitsDict = {'lutIndex': lutIndexVals,
393 'lutStd': lutStd,
394 'expInfo': fgcmExpInfo,
395 'ccdOffsets': ccdOffsets}
397 fgcmFitCycle = fgcm.FgcmFitCycle(configDict, useFits=False,
398 noFitsDict=noFitsDict, noOutput=True)
400 # We determine the conversion from the native units (typically radians) to
401 # degrees for the first star. This allows us to treat coord_ra/coord_dec as
402 # numpy arrays rather than Angles, which would we approximately 600x slower.
403 conv = fgcmStarObservationCat[0]['ra'].asDegrees() / float(fgcmStarObservationCat[0]['ra'])
405 # To load the stars, we need an initial parameter object
406 fgcmPars = fgcm.FgcmParameters.newParsWithArrays(fgcmFitCycle.fgcmConfig,
407 fgcmLut,
408 fgcmExpInfo)
410 # Match star observations to visits
411 # Only those star observations that match visits from fgcmExpInfo['VISIT'] will
412 # actually be transferred into fgcm using the indexing below.
414 obsIndex = fgcmStarIndicesCat['obsIndex']
415 visitIndex = np.searchsorted(fgcmExpInfo['VISIT'],
416 fgcmStarObservationCat['visit'][obsIndex])
418 refMag, refMagErr = extractReferenceMags(fgcmRefCat,
419 self.config.fgcmFitCycle.bands,
420 self.config.fgcmFitCycle.physicalFilterMap)
421 refId = fgcmRefCat['fgcm_id'][:]
423 fgcmStars = fgcm.FgcmStars(fgcmFitCycle.fgcmConfig)
424 fgcmStars.loadStars(fgcmPars,
425 fgcmStarObservationCat['visit'][obsIndex],
426 fgcmStarObservationCat['ccd'][obsIndex],
427 fgcmStarObservationCat['ra'][obsIndex] * conv,
428 fgcmStarObservationCat['dec'][obsIndex] * conv,
429 fgcmStarObservationCat['instMag'][obsIndex],
430 fgcmStarObservationCat['instMagErr'][obsIndex],
431 fgcmExpInfo['FILTERNAME'][visitIndex],
432 fgcmStarIdCat['fgcm_id'][:],
433 fgcmStarIdCat['ra'][:],
434 fgcmStarIdCat['dec'][:],
435 fgcmStarIdCat['obsArrIndex'][:],
436 fgcmStarIdCat['nObs'][:],
437 obsX=fgcmStarObservationCat['x'][obsIndex],
438 obsY=fgcmStarObservationCat['y'][obsIndex],
439 obsDeltaMagBkg=fgcmStarObservationCat['deltaMagBkg'][obsIndex],
440 psfCandidate=fgcmStarObservationCat['psf_candidate'][obsIndex],
441 refID=refId,
442 refMag=refMag,
443 refMagErr=refMagErr,
444 flagID=None,
445 flagFlag=None,
446 computeNobs=True)
448 # Clear out some memory
449 del fgcmStarIdCat
450 del fgcmStarIndicesCat
451 del fgcmRefCat
453 fgcmFitCycle.setLUT(fgcmLut)
454 fgcmFitCycle.setStars(fgcmStars, fgcmPars)
456 converged = False
457 cycleNumber = 0
459 previousReservedRawRepeatability = np.zeros(fgcmPars.nBands) + 1000.0
460 previousParInfo = None
461 previousParams = None
462 previousSuperStar = None
464 while (not converged and cycleNumber < self.config.maxFitCycles):
466 fgcmFitCycle.fgcmConfig.updateCycleNumber(cycleNumber)
468 if cycleNumber > 0:
469 # Use parameters from previous cycle
470 fgcmPars = fgcm.FgcmParameters.loadParsWithArrays(fgcmFitCycle.fgcmConfig,
471 fgcmExpInfo,
472 previousParInfo,
473 previousParams,
474 previousSuperStar)
475 # We need to reset the star magnitudes and errors for the next
476 # cycle
477 fgcmFitCycle.fgcmStars.reloadStarMagnitudes(fgcmStarObservationCat['instMag'][obsIndex],
478 fgcmStarObservationCat['instMagErr'][obsIndex])
479 fgcmFitCycle.initialCycle = False
481 fgcmFitCycle.setPars(fgcmPars)
482 fgcmFitCycle.finishSetup()
484 fgcmFitCycle.run()
486 # Grab the parameters for the next cycle
487 previousParInfo, previousParams = fgcmFitCycle.fgcmPars.parsToArrays()
488 previousSuperStar = fgcmFitCycle.fgcmPars.parSuperStarFlat.copy()
490 self.log.info("Raw repeatability after cycle number %d is:" % (cycleNumber))
491 for i, band in enumerate(fgcmFitCycle.fgcmPars.bands):
492 if not fgcmFitCycle.fgcmPars.hasExposuresInBand[i]:
493 continue
494 rep = fgcmFitCycle.fgcmPars.compReservedRawRepeatability[i] * 1000.0
495 self.log.info(" Band %s, repeatability: %.2f mmag" % (band, rep))
497 # Check for convergence
498 if np.alltrue((previousReservedRawRepeatability
499 - fgcmFitCycle.fgcmPars.compReservedRawRepeatability)
500 < self.config.convergenceTolerance):
501 self.log.info("Raw repeatability has converged after cycle number %d." % (cycleNumber))
502 converged = True
503 else:
504 fgcmFitCycle.fgcmConfig.expGrayPhotometricCut[:] = fgcmFitCycle.updatedPhotometricCut
505 fgcmFitCycle.fgcmConfig.expGrayHighCut[:] = fgcmFitCycle.updatedHighCut
506 fgcmFitCycle.fgcmConfig.precomputeSuperStarInitialCycle = False
507 fgcmFitCycle.fgcmConfig.freezeStdAtmosphere = False
508 previousReservedRawRepeatability[:] = fgcmFitCycle.fgcmPars.compReservedRawRepeatability
509 self.log.info("Setting exposure gray photometricity cuts to:")
510 for i, band in enumerate(fgcmFitCycle.fgcmPars.bands):
511 if not fgcmFitCycle.fgcmPars.hasExposuresInBand[i]:
512 continue
513 cut = fgcmFitCycle.updatedPhotometricCut[i] * 1000.0
514 self.log.info(" Band %s, photometricity cut: %.2f mmag" % (band, cut))
516 cycleNumber += 1
518 # Log warning if not converged
519 if not converged:
520 self.log.warn("Maximum number of fit cycles exceeded (%d) without convergence." % (cycleNumber))
522 # Do final clean-up iteration
523 fgcmFitCycle.fgcmConfig.freezeStdAtmosphere = False
524 fgcmFitCycle.fgcmConfig.resetParameters = False
525 fgcmFitCycle.fgcmConfig.maxIter = 0
526 fgcmFitCycle.fgcmConfig.outputZeropoints = True
527 fgcmFitCycle.fgcmConfig.outputStandards = True
528 fgcmFitCycle.fgcmConfig.doPlots = self.config.doDebuggingPlots
529 fgcmFitCycle.fgcmConfig.updateCycleNumber(cycleNumber)
530 fgcmFitCycle.initialCycle = False
532 fgcmPars = fgcm.FgcmParameters.loadParsWithArrays(fgcmFitCycle.fgcmConfig,
533 fgcmExpInfo,
534 previousParInfo,
535 previousParams,
536 previousSuperStar)
537 fgcmFitCycle.fgcmStars.reloadStarMagnitudes(fgcmStarObservationCat['instMag'][obsIndex],
538 fgcmStarObservationCat['instMagErr'][obsIndex])
539 fgcmFitCycle.setPars(fgcmPars)
540 fgcmFitCycle.finishSetup()
542 self.log.info("Running final clean-up fit cycle...")
543 fgcmFitCycle.run()
545 self.log.info("Raw repeatability after clean-up cycle is:")
546 for i, band in enumerate(fgcmFitCycle.fgcmPars.bands):
547 if not fgcmFitCycle.fgcmPars.hasExposuresInBand[i]:
548 continue
549 rep = fgcmFitCycle.fgcmPars.compReservedRawRepeatability[i] * 1000.0
550 self.log.info(" Band %s, repeatability: %.2f mmag" % (band, rep))
552 # Do the outputs. Need to keep track of tract.
554 superStarChebSize = fgcmFitCycle.fgcmZpts.zpStruct['FGCM_FZPT_SSTAR_CHEB'].shape[1]
555 zptChebSize = fgcmFitCycle.fgcmZpts.zpStruct['FGCM_FZPT_CHEB'].shape[1]
557 zptSchema = makeZptSchema(superStarChebSize, zptChebSize)
558 zptCat = makeZptCat(zptSchema, fgcmFitCycle.fgcmZpts.zpStruct)
560 atmSchema = makeAtmSchema()
561 atmCat = makeAtmCat(atmSchema, fgcmFitCycle.fgcmZpts.atmStruct)
563 stdStruct, goodBands = fgcmFitCycle.fgcmStars.retrieveStdStarCatalog(fgcmFitCycle.fgcmPars)
564 stdSchema = makeStdSchema(len(goodBands))
565 stdCat = makeStdCat(stdSchema, stdStruct, goodBands)
567 outStruct = self.fgcmOutputProducts.generateTractOutputProducts(dataRefDict,
568 tract,
569 visitCat,
570 zptCat, atmCat, stdCat,
571 self.config.fgcmBuildStars,
572 returnCatalogs=returnCatalogs,
573 butler=butler)
575 outStruct.repeatability = fgcmFitCycle.fgcmPars.compReservedRawRepeatability
577 return outStruct