1# This file is part of ctrl_mpexec. 

2# 

3# Developed for the LSST Data Management System. 

4# This product includes software developed by the LSST Project 

5# (http://www.lsst.org). 

6# See the COPYRIGHT file at the top-level directory of this distribution 

7# for details of code ownership. 

8# 

9# This program is free software: you can redistribute it and/or modify 

10# it under the terms of the GNU General Public License as published by 

11# the Free Software Foundation, either version 3 of the License, or 

12# (at your option) any later version. 

13# 

14# This program is distributed in the hope that it will be useful, 

15# but WITHOUT ANY WARRANTY; without even the implied warranty of 

16# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 

17# GNU General Public License for more details. 

18# 

19# You should have received a copy of the GNU General Public License 

20# along with this program. If not, see <http://www.gnu.org/licenses/>. 

21 

22import logging 

23from types import SimpleNamespace 

24 

25from ... import CmdLineFwk 

26 

27_log = logging.getLogger(__name__.partition(".")[2]) 

28 

29 

30def qgraph(pipelineObj, qgraph, skip_existing, save_qgraph, save_single_quanta, qgraph_dot, 

31 butler_config, input, output, output_run, extend_run, replace_run, prune_replaced, data_query, 

32 show, **kwargs): 

33 """Implements the command line interface `pipetask qgraph` subcommand, 

34 should only be called by command line tools and unit test code that test 

35 this function. 

36 

37 Parameters 

38 ---------- 

39 pipelineObj : `pipe.base.Pipeline` or None. 

40 The pipeline object used to generate a qgraph. If this is not `None` 

41 then `qgraph` should be `None`. 

42 qgraph : `str` or `None` 

43 URI location for a serialized quantum graph definition as a pickle 

44 file. If this option is not None then `pipeline` should be `None`. 

45 skip_existing : `bool` 

46 If all Quantum outputs already exist in the output RUN collection then 

47 that Quantum will be excluded from the QuantumGraph. Will only be used 

48 if `extend_run` flag is set. 

49 save_qgraph : `str` or `None` 

50 URI location for storing a serialized quantum graph definition as a 

51 pickle file. 

52 save_single_quanta : `str` or `None` 

53 Format string of URI locations for storing individual quantum graph 

54 definition (pickle files). The curly brace {} in the input string will 

55 be replaced by a quantum number. 

56 qgraph_dot : `str` or `None` 

57 Path location for storing GraphViz DOT representation of a quantum graph. 

58 butler_config : `str`, `dict`, or `lsst.daf.butler.Config` 

59 If `str`, `butler_config` is the path location of the gen3 

60 butler/registry config file. If `dict`, `butler_config` is key value 

61 pairs used to init or update the `lsst.daf.butler.Config` instance. If 

62 `Config`, it is the object used to configure a Butler. 

63 input : `str` 

64 Comma-separated names of the input collection(s). Entries may include a 

65 colon (:), the first string is a dataset type name that restricts the 

66 search in that collection. 

67 output : `str` 

68 Name of the output CHAINED collection. This may either be an existing 

69 CHAINED collection to use as both input and output (if `input` is 

70 `None`), or a new CHAINED collection created to include all inputs 

71 (if `input` is not `None`). In both cases, the collection's children 

72 will start with an output RUN collection that directly holds all new 

73 datasets (see `output_run`). 

74 output_run : `str` 

75 Name of the new output RUN collection. If not provided then `output` 

76 must be provided and a new RUN collection will be created by appending 

77 a timestamp to the value passed with `output`. If this collection 

78 already exists then `extend_run` must be passed. 

79 extend_run : `bool` 

80 Instead of creating a new RUN collection, insert datasets into either 

81 the one given by `output_run` (if provided) or the first child 

82 collection of `output` (which must be of type RUN). 

83 replace_run : `bool` 

84 Before creating a new RUN collection in an existing CHAINED collection, 

85 remove the first child collection (which must be of type RUN). This can 

86 be used to repeatedly write to the same (parent) collection during 

87 development, but it does not delete the datasets associated with the 

88 replaced run unless `prune-replaced` is also True. Requires `output`, 

89 and `extend_run` must be `None`. 

90 prune_replaced : "unstore", "purge", or `None`. 

91 If not `None`, delete the datasets in the collection replaced by 

92 `replace_run`, either just from the datastore ("unstore") or by 

93 removing them and the RUN completely ("purge"). Requires `replace_run`. 

94 data_query : `str` 

95 User query selection expression. 

96 show : `list` [`str`] or `None` 

97 Descriptions of what to dump to stdout. 

98 kwargs : `dict` [`str`, `str`] 

99 Ignored; click commands may accept options for more than one script 

100 function and pass all the option kwargs to each of the script functions 

101 which ingore these unused kwargs. 

102 

103 Returns 

104 ------- 

105 qgraph : `lsst.pipe.base.QuantumGraph` 

106 The qgraph object that was created. 

107 """ 

108 args = SimpleNamespace(qgraph=qgraph, 

109 save_qgraph=save_qgraph, 

110 save_single_quanta=save_single_quanta, 

111 qgraph_dot=qgraph_dot, 

112 butler_config=butler_config, 

113 input=input, 

114 output=output, 

115 output_run=output_run, 

116 extend_run=extend_run, 

117 replace_run=replace_run, 

118 prune_replaced=prune_replaced, 

119 data_query=data_query, 

120 show=show, 

121 skip_existing=skip_existing) 

122 

123 f = CmdLineFwk() 

124 qgraph = f.makeGraph(pipelineObj, args) 

125 

126 # optionally dump some info. 

127 if show: 

128 f.showInfo(args, pipelineObj, qgraph) 

129 

130 return qgraph