Coverage for tests/test_appipe.py : 28%

# 

# This file is part of ap_pipe. 

# 

# Developed for the LSST Data Management System. 

# This product includes software developed by the LSST Project 

# (http://www.lsst.org). 

# See the COPYRIGHT file at the top-level directory of this distribution 

# for details of code ownership. 

# 

# This program is free software: you can redistribute it and/or modify 

# it under the terms of the GNU General Public License as published by 

# the Free Software Foundation, either version 3 of the License, or 

# (at your option) any later version. 

# 

# This program is distributed in the hope that it will be useful, 

# but WITHOUT ANY WARRANTY; without even the implied warranty of 

# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 

# GNU General Public License for more details. 

# 

# You should have received a copy of the GNU General Public License 

# along with this program. If not, see <http://www.gnu.org/licenses/>. 

# 

import contextlib 

import os 

import unittest 

from unittest.mock import patch, Mock 

import lsst.utils.tests 

import lsst.pex.exceptions as pexExcept 

import lsst.daf.persistence as dafPersist 

import lsst.pipe.base as pipeBase 

from lsst.ap.pipe import ApPipeTask 

class PipelineTestSuite(lsst.utils.tests.TestCase): 

''' 

A set of tests for the functions in ap_pipe. 

''' 

@classmethod 

def _makeDefaultConfig(cls): 

config = ApPipeTask.ConfigClass() 

config.load(os.path.join(cls.datadir, "config", "apPipe.py")) 

config.apdb.db_url = "sqlite://" 

config.apdb.isolation_level = "READ_UNCOMMITTED" 

return config 

@classmethod 

def setUpClass(cls): 

try: 

cls.datadir = lsst.utils.getPackageDir("ap_pipe_testdata") 

except pexExcept.NotFoundError: 

raise unittest.SkipTest("ap_pipe_testdata not set up") 

def setUp(self): 

self.config = self._makeDefaultConfig() 

self.butler = dafPersist.Butler(inputs={'root': self.datadir}) 

def makeMockDataRef(datasetType, level=None, dataId={}, **rest): 

mockDataRef = Mock(dafPersist.ButlerDataRef) 

mockDataRef.dataId = dict(dataId, **rest) 

return mockDataRef 

butlerPatcher = patch.object(self.butler, "dataRef", 

side_effect=makeMockDataRef) 

butlerPatcher.start() 

self.addCleanup(butlerPatcher.stop) 

self.dataId = {"visit": 413635, "ccdnum": 42} 

self.inputRef = self.butler.dataRef("raw", **self.dataId) 

@contextlib.contextmanager 

def mockPatchSubtasks(self, task): 

"""Make mocks for all the ap_pipe subtasks. 

This is needed because the task itself cannot be a mock. 

The task's subtasks do not exist until the task is created, so 

this allows us to mock them instead. 

Parameters 

---------- 

task : `lsst.ap.pipe.ApPipeTask` 

The task whose subtasks will be mocked. 

Yields 

------ 

subtasks : `lsst.pipe.base.Struct` 

All mocks created by this context manager, including: 

``ccdProcessor`` 

``differencer`` 

``dpddifier`` 

``associator`` 

``forcedSource`` 

a mock for the corresponding subtask. Mocks do not return any 

particular value, but have mocked methods that can be queried 

for calls by ApPipeTask 

""" 

with patch.object(task, "ccdProcessor") as mockCcdProcessor, \ 

patch.object(task, "differencer") as mockDifferencer, \ 

patch.object(task, "diaSourceDpddifier") as mockDpddifier, \ 

patch.object(task, "associator") as mockAssociator, \ 

patch.object(task, "diaForcedSource") as mockForcedSource, \ 

patch.object(task, "apdb") as mockApdb: 

yield pipeBase.Struct(ccdProcessor=mockCcdProcessor, 

differencer=mockDifferencer, 

dpddifier=mockDpddifier, 

associator=mockAssociator, 

diaForcedSource=mockForcedSource, 

apdb=mockApdb) 

def testGenericRun(self): 

"""Test the normal workflow of each ap_pipe step. 

""" 

task = ApPipeTask(self.butler, config=self.config) 

with self.mockPatchSubtasks(task) as subtasks: 

task.runDataRef(self.inputRef) 

subtasks.ccdProcessor.runDataRef.assert_called_once() 

subtasks.differencer.runDataRef.assert_called_once() 

subtasks.associator.run.assert_called_once() 

subtasks.diaForcedSource.run.assert_called_once() 

def testReuseExistingOutput(self): 

"""Test reuse keyword to ApPipeTask.runDataRef. 

""" 

task = ApPipeTask(self.butler, config=self.config) 

self.checkReuseExistingOutput(task, ['ccdProcessor']) 

self.checkReuseExistingOutput(task, ['ccdProcessor', 'differencer']) 

def checkReuseExistingOutput(self, task, skippable): 

"""Check whether a task's subtasks are skipped when "reuse" is set. 

Mock guarantees that all "has this been made" tests pass, 

so skippable subtasks should actually be skipped. 

""" 

with self.mockPatchSubtasks(task) as subtasks: 

struct = task.runDataRef(self.inputRef, reuse=skippable) 

for subtaskName, runner in { 

'ccdProcessor': subtasks.ccdProcessor.runDataRef, 

'differencer': subtasks.differencer.runDataRef, 

'associator': subtasks.associator.run, 

}.items(): 

msg = "subtask = " + subtaskName 

if subtaskName in skippable: 

runner.assert_not_called() 

self.assertIsNone(struct.getDict()[subtaskName], msg=msg) 

else: 

runner.assert_called_once() 

self.assertIsNotNone(struct.getDict()[subtaskName], msg=msg) 

def testCalexpRun(self): 

"""Test the calexp template workflow of each ap_pipe step. 

""" 

calexpConfigFile = os.path.join(lsst.utils.getPackageDir('ap_pipe'), 

'config', 'calexpTemplates.py') 

calexpConfig = self._makeDefaultConfig() 

calexpConfig.load(calexpConfigFile) 

calexpConfig.differencer.doSelectSources = False # Workaround for DM-18394 

task = ApPipeTask(self.butler, config=calexpConfig) 

with self.mockPatchSubtasks(task) as subtasks: 

# We use the same dataId here for both template and science 

# in difference imaging. This is OK because everything is a mock 

# and we aren't actually doing any image processing. 

task.runDataRef(self.inputRef, templateIds=[self.dataId]) 

self.assertEqual(subtasks.ccdProcessor.runDataRef.call_count, 2) 

subtasks.differencer.runDataRef.assert_called_once() 

subtasks.associator.run.assert_called_once() 

subtasks.diaForcedSource.run.assert_called_once() 

class MemoryTester(lsst.utils.tests.MemoryTestCase): 

pass 

def setup_module(module): 

lsst.utils.tests.init() 

182 ↛ 183line 182 didn't jump to line 183, because the condition on line 182 was never trueif __name__ == "__main__": 

lsst.utils.tests.init() 

unittest.main()