Coverage for tests/test_job.py : 11%
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# This file is part of verify. # # Developed for the LSST Data Management System. # This product includes software developed by the LSST Project # (https://www.lsst.org). # See the COPYRIGHT file at the top-level directory of this distribution # for details of code ownership. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see <https://www.gnu.org/licenses/>.
MeasurementSet, MetricSet, SpecificationSet, Datum, Blob)
"""Test Job classes."""
# Mock metrics self.metric_photrms = Metric('test.PhotRms', 'Photometric RMS', 'mmag') self.metric_photmed = Metric('test.PhotMedian', 'Median magntidue', 'mag') self.metric_set = MetricSet([self.metric_photrms, self.metric_photmed])
# Mock specifications self.spec_photrms_design = ThresholdSpecification( 'test.PhotRms.design', 20. * u.mmag, '<' ) self.spec_set = SpecificationSet([self.spec_photrms_design])
# Mock measurements self.meas_photrms = Measurement( self.metric_photrms, 15 * u.mmag, notes={'note': 'value'}) self.meas_photrms.extras['n_stars'] = Datum( 250, label='N stars', description='Number of stars included in RMS estimate') self.measurement_set = MeasurementSet([self.meas_photrms])
# Metrics for Job 2 self.metric_test_2 = Metric('test2.SourceCount', 'Source Count', '') self.blob_test_2 = Blob( 'test2_blob', sn=Datum(50 * u.dimensionless_unscaled, label='S/N')) self.metric_set_2 = MetricSet([self.metric_test_2])
# Specifications for Job 2 self.spec_test_2 = ThresholdSpecification( 'test2.SourceCount.design', 100 * u.dimensionless_unscaled, '>=') self.spec_set_2 = SpecificationSet([self.spec_test_2])
# Measurements for Job 2 self.meas_test_2_SourceCount = Measurement( self.metric_test_2, 200 * u.dimensionless_unscaled) self.meas_test_2_SourceCount.link_blob(self.blob_test_2) self.measurement_set_2 = MeasurementSet([self.meas_test_2_SourceCount])
"""Create a Job from object sets.""" job = Job(metrics=self.metric_set, specs=self.spec_set, measurements=self.measurement_set)
# Test object access via properties self.assertIn('test.PhotRms.design', job.specs) self.assertIn('test.PhotRms', job.metrics) self.assertIn('test.PhotRms', job.measurements)
# Test metadata access self.assertIn('test.PhotRms.note', job.meta) self.assertEqual(job.meta['test.PhotRms.note'], 'value') # measurement metadata is always prefixed self.assertNotIn('note', job.meta)
job.meta['job-level-key'] = 'yes' self.assertEqual(job.meta['job-level-key'], 'yes') self.assertIn('job-level-key', job.meta)
self.assertEqual(len(job.meta), 2)
job.meta.update({'test.PhotRms.note2': 'foo', 'dataset': 'ci_hsc'}) # note2 should be in measurement notes self.assertEqual( job.measurements['test.PhotRms'].notes['note2'], 'foo') self.assertEqual(job.meta['dataset'], 'ci_hsc') # Delete measurement and job-level metadata del job.meta['test.PhotRms.note2'] self.assertNotIn('test.PhotRms.note2', job.meta) self.assertNotIn('note2', job.measurements['test.PhotRms'].notes) del job.meta['dataset'] self.assertNotIn('dataset', job.meta)
self.assertEqual( set(job.meta.keys()), set(['job-level-key', 'test.PhotRms.note']) ) self.assertEqual( set([key for key in job.meta]), set(['job-level-key', 'test.PhotRms.note']) ) keys = set() for key, value in job.meta.items(): keys.add(key) self.assertEqual(keys, set(['job-level-key', 'test.PhotRms.note']))
# Add a new measurement m = Measurement('test.PhotMedian', 28.5 * u.mag, notes={'aperture_corr': True}) job.measurements.insert(m) self.assertIn('test.PhotMedian', job.measurements) self.assertEqual(job.meta['test.PhotMedian.aperture_corr'], True)
# Test serialization json_doc = job.json
self.assertIn('measurements', json_doc) self.assertEqual(len(json_doc['measurements']), len(job.measurements))
self.assertIn('blobs', json_doc)
self.assertIn('metrics', json_doc) self.assertEqual(len(json_doc['metrics']), len(job.metrics))
self.assertIn('specs', json_doc) self.assertEqual(len(json_doc['specs']), len(job.specs))
self.assertIn('meta', json_doc) self.assertEqual(len(json_doc['meta']), len(job.meta))
new_job = Job.deserialize(**json_doc) self.assertEqual(job, new_job)
# check job-to-measurement metadata deserialization self.assertEqual( new_job.measurements['test.PhotRms'].notes['note'], 'value') self.assertEqual( new_job.meta['test.PhotRms.note'], 'value') self.assertEqual( new_job.meta['job-level-key'], 'yes')
job_1 = Job(metrics=self.metric_set, specs=self.spec_set, measurements=self.measurement_set) job_2 = Job(metrics=self.metric_set_2, specs=self.spec_set_2, measurements=self.measurement_set_2)
job_1 += job_2
self.assertIn(self.metric_photrms.name, job_1.metrics) self.assertIn(self.metric_test_2.name, job_1.metrics) self.assertIn('test.PhotRms.design', job_1.specs) self.assertIn('test2.SourceCount.design', job_1.specs) self.assertIn('test.PhotRms', job_1.measurements) self.assertIn('test2.SourceCount', job_1.measurements) self.assertIn('test.PhotRms', job_1.measurements['test.PhotRms'].blobs) self.assertIn( 'test2_blob', job_1.measurements['test2.SourceCount'].blobs)
# Create a Job without Metric definitions meas = Measurement('validate_drp.PA1', 15 * u.mmag) measurement_set = MeasurementSet([meas])
job = Job(measurements=measurement_set) job.reload_metrics_package('verify_metrics')
# Should now have metrics and specs self.assertTrue(len(job.specs) > 0) self.assertTrue(len(job.metrics) > 0) self.assertIsInstance( job.measurements['validate_drp.PA1'].metric,
Metric)
unittest.main() |